XLOC_021097 (creb3l3a)


Basic Information

Item Value
gene id XLOC_021097
gene name creb3l3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20112715 ~ 20126230 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041445
TGAGCAGAGGGACACAGACAGAGTCAAGACAGATATTTGGGTTTTGCCCAATTTTTGGCGTTTTTTCAAGGATTATTTGGAGTGTATCACAGCAATGGATCACTATTCAGACCAGGGCGGTGATGGGATAGAACTTCTTGATTTGCTTTTTGACAAGAATGATGGCATCTTACGCTATGAGAATATGGGACAACAGAACAATCAGCTTTGGCCAGTTCAAGATCCTCATATGATGATGACCCCGCAGGGCAACGAGGACTTCTTCAACGCACTTATAGGTGGCAGTGACTCTGTTTCTGGATCTCCTGTTTGGTCGCCCTCTCCTAGCGACAGCGGGATCAGCGAAGACCCTCATTCAGATCACATCGACAGTCCTCCACCGAATGCAAGCCCACCAATGGAGCCTCACATTGTCGTATCCCAGACTCAACACAGTCTCAACATCAACTTCCCTTTTGATTTCAATGGCTGGGAGACTGGTTTCCTCCCAGATCAGTCCGGAGGGACGCAGTGTGCATCTGAAACGCCACAGGCACAACAGACCACTGGATTCCCCCTAACTGTCAAGGACCTGCTGCTATCTGGCACACCAGAGCCTGCCGCGAAGGTGTCTCAGCAGTCCTACCAGGAGCTGATTCTCACAGAGGATGAGAAACGACTGCTTGCCAAGGAAGGGATGACACTGCCAAATCAGTTCCCGCTCACCAAGTATGAGGAGAGGATTCTGAAGAAAATCCGCCGAAAGATCCGCAACAAGCAGTCTGCCCAGGAGAgcaggaagaagaagaaagaatACATCGATGGCCTGGAGAGCAGgATGGCGGCATGCAGCGCGCACAACCATGAGCTGCAGAGGAAAGTCTTCCAGCTGGAGAAGTGTAACATATCCCTGATGGAACAACTGCGTCGGCTGCAGGCGCTGGTCATGAACGGATCCAACAAACCGGTCCAGGCTGGAACCTGTGTTCTGGTGCTGCTTCTGTCCTTCACCTTGATTCTGCTGCCCAATCTGAAGCCCTTCACAGACACCAAGGTCAGTCAACATGGAGACTTCAGCCCAATGAGAGTTCAGTCACGGTCACTGCACAACCTCCAGTCTTCCCGCGTCCTGCGCAACCTCGACCATCCGTACTCCATGACAGAAAACGCCAAAATTCTCCCGCGCTTTCCCGAGGATAAAACTATGGAGGAGATTGCGTCGCTTCTGGGAAGACTTCACAGGAGACCTCAATTCACGGAGTACGACCCCGAGTCTCACAATCATAGTTTCGACCAGCATGACGAGCACCATCACGGAGACCCCATAACCGGACACGTAGCGACGGTGACCTTGAATCCACGGCGCGGCTCCAGGCGGAGTCCTCATGCTGATGATATGTGATGGGCAGAAGGGGATTTAACCGGGGATTTGTCAAAACGCCTTCTGAAGACGGGAGCCAGCTCAAAGATTGCTggaagcttttctttttcttctttctgcAAAATCTTCAGGAGATAGGCCTAAAGTAAATATTTGCTTTTTATTATCAGACTTAGGATTGAAAATAagtcaaatttatttgtttatcatcTCATTTTTAAACTTGACCCCCccgccaaagaaaaaaaaaattaccatggATTTATATAGAGtctattccttttttttttgccatattttcaatcatatttatacatttaacgGGAAAAAGATGCTTAATGTGCTTTAATGTGATTTATAAAGACCaaactttattaaatatattctGTGTGCAGATAGGCAGATTAACTAAGAATATGAACATTATATAAACGTTATACAATATAAAAGTTTTCCTCTCATAAATGAGAAAATGCTTGCTTTATGCTTTAGGAAAATGATATAGGCTACAGACCAAATTtgatatataatacaaatatatgtaatatgtgtgtatatatatacataggcATAGGCATATGATTAACATATTTtaacatatgtatttataatataattcattaaaaCATATGGATAGGGTTGgacggacaaaaaaaaaaaaaatcgacccTGGCATTTTGGGACAAAGCGGCCCACTTCATTTAATCAAAATGCTACCCATCTGCATGCCCTGGAATATCTTTACCAACTACCAttatataaaagcacaaaagccatatataggaaataataagagtt

Function

symbol description
creb3l3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in digestive system; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human CREB3L3 (cAMP responsive element binding protein 3 like 3).

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035497 cAMP response element binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4298 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in digestive system; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human CREB3L3 (cAMP responsive element binding protein 3 like 3).

Ensembl:

ensembl_id ENSDARG00000056226

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041445 True 2158 mRNA 0.44 10 20112715 20126230

Neighbor

gene id symbol gene type direction distance location
XLOC_021096 rxfp3.2b coding downstream 6746 20104706 ~ 20105969 (-)
XLOC_021095 celf5a coding downstream 101111 19665617 ~ 20011604 (-)
XLOC_021094 NA coding downstream 474686 19622740 ~ 19638029 (-)
XLOC_021093 NA coding downstream 510253 19598045 ~ 19602462 (-)
XLOC_021092 micos13 coding downstream 559912 19547476 ~ 19552803 (-)
XLOC_021098 btbd2a coding upstream 32837 20159067 ~ 20166664 (-)
XLOC_021099 mbd3b coding upstream 120357 20246587 ~ 20261899 (-)
XLOC_021100 mbd3b coding upstream 141292 20267522 ~ 20309283 (-)
XLOC_021101 tcf3b coding upstream 185950 20312180 ~ 20342260 (-)
XLOC_021102 zbtb7a coding upstream 246303 20372533 ~ 20386982 (-)
XLOC_021090 BX936298.1 non-coding downstream 682791 19429806 ~ 19429924 (-)
XLOC_021089 BX936298.2 non-coding downstream 712780 19397226 ~ 19399935 (-)
XLOC_021088 BX927243.3 non-coding downstream 896527 19215022 ~ 19216188 (-)
XLOC_021106 BX088720.1 non-coding upstream 364211 20490441 ~ 20490557 (-)
XLOC_021107 NA non-coding upstream 395974 20522204 ~ 20547540 (-)
XLOC_021117 CU693455.1 non-coding upstream 992672 21118902 ~ 21119016 (-)
XLOC_021118 NA non-coding upstream 993666 21119896 ~ 21121096 (-)
XLOC_021124 NA non-coding upstream 1417980 21544210 ~ 21547893 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03551269_03557640 CREB3L3A coding CI01000030 null 3550874 ~ 3558196 (-)