Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00041445 |
| length | 2158 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 10 |
| gene id | XLOC_021097 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 20112715 ~ 20126230 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030968 | endoplasmic reticulum unfolded protein response | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0035497 | cAMP response element binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-4298 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within endoplasmic reticulum unfolded protein response and positive regulation of transcription by RNA polymerase II. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Is expressed in digestive system; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human CREB3L3 (cAMP responsive element binding protein 3 like 3). |
| ensembl_id | ENSDART00000138688 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042394 | lncRNA | downstream | 474686 | 19622740 ~ 19638029 (-) | True | XLOC_021094 |
| TCONS_00042393 | lncRNA | downstream | 510253 | 19598045 ~ 19602462 (-) | True | XLOC_021093 |
| TCONS_00042392 | lncRNA | downstream | 1100956 | 19006584 ~ 19011759 (-) | True | XLOC_021085 |
| TCONS_00042391 | lncRNA | downstream | 1114541 | 18993839 ~ 18998174 (-) | True | XLOC_021084 |
| TCONS_00042390 | lncRNA | downstream | 1166121 | 18942516 ~ 18946594 (-) | True | XLOC_021083 |
| TCONS_00042395 | lncRNA | upstream | 395974 | 20522204 ~ 20547540 (-) | True | XLOC_021107 |
| TCONS_00041468 | lncRNA | upstream | 588827 | 20715057 ~ 20716028 (-) | True | XLOC_021110 |
| TCONS_00042396 | lncRNA | upstream | 993666 | 21119896 ~ 21121096 (-) | True | XLOC_021118 |
| TCONS_00042397 | lncRNA | upstream | 1417980 | 21544210 ~ 21547856 (-) | False | XLOC_021124 |
| TCONS_00042398 | lncRNA | upstream | 1417980 | 21544210 ~ 21547893 (-) | True | XLOC_021124 |
| TCONS_00041444 | mRNA | downstream | 6746 | 20104706 ~ 20105969 (-) | True | XLOC_021096 |
| TCONS_00041442 | mRNA | downstream | 101111 | 19665617 ~ 20011604 (-) | False | XLOC_021095 |
| TCONS_00041443 | mRNA | downstream | 101239 | 19665642 ~ 20011476 (-) | True | XLOC_021095 |
| TCONS_00041440 | mRNA | downstream | 559912 | 19547476 ~ 19552803 (-) | False | XLOC_021092 |
| TCONS_00041441 | mRNA | downstream | 559919 | 19549929 ~ 19552796 (-) | True | XLOC_021092 |
| TCONS_00041446 | mRNA | upstream | 32837 | 20159067 ~ 20166660 (-) | False | XLOC_021098 |
| TCONS_00041447 | mRNA | upstream | 33338 | 20159568 ~ 20166664 (-) | False | XLOC_021098 |
| TCONS_00041450 | mRNA | upstream | 120357 | 20246587 ~ 20259309 (-) | False | XLOC_021099 |
| TCONS_00041452 | mRNA | upstream | 141292 | 20267522 ~ 20289948 (-) | False | XLOC_021100 |
| TCONS_00041454 | mRNA | upstream | 163516 | 20289746 ~ 20309283 (-) | False | XLOC_021100 |
| TCONS_00041437 | other | downstream | 682791 | 19429806 ~ 19429924 (-) | True | XLOC_021090 |
| TCONS_00041435 | other | downstream | 712780 | 19397226 ~ 19399935 (-) | False | XLOC_021089 |
| TCONS_00041436 | other | downstream | 712780 | 19398172 ~ 19399935 (-) | True | XLOC_021089 |
| TCONS_00041433 | other | downstream | 896527 | 19215022 ~ 19216188 (-) | False | XLOC_021088 |
| TCONS_00041448 | other | upstream | 38388 | 20164618 ~ 20166209 (-) | False | XLOC_021098 |
| TCONS_00041449 | other | upstream | 39453 | 20165683 ~ 20166583 (-) | True | XLOC_021098 |
| TCONS_00041451 | other | upstream | 130537 | 20256767 ~ 20261899 (-) | True | XLOC_021099 |
| TCONS_00041464 | other | upstream | 364211 | 20490441 ~ 20490557 (-) | True | XLOC_021106 |
| TCONS_00041481 | other | upstream | 992672 | 21118902 ~ 21119016 (-) | True | XLOC_021117 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000030_03551269_03557640.mRNA | True | 2238 | mRNA | 0.46 | 10 | CI01000030 | 3550874 ~ 3558196 (-) |
