RNA id: CI01000030_03551269_03557640.mRNA


Basic Information

Item Value
RNA id CI01000030_03551269_03557640.mRNA
length 2238
RNA type mRNA
GC content 0.46
exon number 10
gene id CI01000030_03551269_03557640
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3550874 ~ 3558196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCTAAGACTAATAATCATCATAATAATGTTTATTATGTATATTGTCTTTCTGGATTATCACAACTGTGTAAACGGTCACATTACCTCAGACAGAAAGGAAAATATGACCTTTGAACTATGGATTAGGTGTTGTCCCATAACAAATGTCTGAGGCACATACTTGAAAGTGCATTGAAACATTGAAGCAACTTTGAGGAATGTTTTTTTTTTTTTTTTTTTTCCAGGGATAAGATAGGTAAGTATGGTACACTGTCAGGGAAAAAAAGTGCAAAAATTGTACCTTCTTCTGGCAGTGTATGTAAAACAACATGATTCCGCCATCATTTTTAGAGGTGAGATTGCCCTTTTAATTTACATCCCTACAAAGAACAGCCAATCAAATGCAGCCCACAGGATGATGACCTGACTGTTGCGTTGGAGTTCGAACTTTGTCCTGGGTGAGCAGAGTGACACAGACAGAGTCAGGACAACCTACTGACAGATGTTTTGGTTTTGTCCCATTTTTGGCGTTTTTTCAAGGATATTTTAGACTGCTTTACCCCTGGGTCAGAGTAATGGAGCACTATTCAGACCAGGGCGGTGAGGGGTTAGAACTGCTCGATTTGCTCTTCGATAAGAATGATGGTATCCTACGGCATGAGAACATGGGACAACAAATCGATCAGCTTTGGCCAGTTCAAGATCCTCATATGATGATGCCTGCCCAGGGAAACAAGGACTTCTTCAATGCACTTTTAGGTGGGTCCGACTCTGTTTCGGGGTCTCCAGTTTGGTCGCCCTCTCCTAGTGACAGCGGAATCAGCGAAGACCCTCATTCGGATCACATCGACAGTCCGCCACCAAACACAAGCCCCCCGGTGGAGCCTTGCATCGTCATATCCCAGATGCAACACAATCTCGACACAAACTTCCCATTTGATTTCAATGGCTGGGAGACTGGCTTCTACCCAGACAGGGCTGGAGGGATACAGCGTGCATCTGAAACGCCACAGGAACAACCGACCAGTGGATTCCCCCTAACTGTCAAGGACCTGCTGCTATCTGGCACACCAGAGCCTACCACAAAGGTGTCCCAGCAGTCCTACCAGGAGCTGGTTCTCACAGAGGATGAGAAACGACTACTTGCCAAGGAAGGAGTGACTCTGCCAAATCAGTTCCCGCTCACCAAGTACGAGGAAAGGATTCTGAAGAAAATCCGCCGAAAGATCCGCAACAAGCAGTCGGCCCAAGAGAGCAGGAAGAAGAAGAAAGAATACATCGACGGCCTGGAGAGCAGGATGGCGGCATGCAGTGCACACAACCAGGAGCTGCAGAGGAAAGTCTTCCAGCTGGAGAAATGCAACATCTCCCTGATGGAACAACTTCGTCGGCTCCAGGCGATGGTCATGAACGGATCCAACAAACTGGCCCAGACTGGGACCTGCATTCTGGTGCTGCTTCTGTCATTCACCTTGATTCTGCTGCCCAGTCTGAAGCCCTTCACAGATACCAAGGTCAGCCAGCACGGAGACTTCAGCCCACTGAGAGTTCAGTCACGGTCACTGCGCAACCTCCAGTCTTCCCGCGTGCTGCGCACCCTCGAGTATCCGTACTCAGTGACAGAGGACCCCAAAATCCCCCTGCGCTTCTCTGAGGATAAAAGTATGGAAGAGATAGCGTCGCTGCTGGGAAGACTTCACAGGAGACCAGAGTTCACTAATTACGACTCCGAATTTCACAACCACAGTTTAGACCAGCATGACGACCATCACCATGGAGACCCCATCACTGGGCATGTAGAGACGGTGACCTTGAATCCACGACGTGGCTCAAGGCGGAGTCCTCATGCTGATGATATGTGAAGGGCATAAGGGGATTTACCCGGGGATTTGTCAAAACTCCTTTAACAGCGCTTTTGAAGACGGGAGCCAGCCAACAGATGGCTGGAAGCTATTTTTTCCTTCTTTCTAAAGTAATCTTTAAGAGATACACTATCTACTTATTTATCAAACTTCGGATAAAATAATAAGTCCAATTTTATCTGTTCATTTGGAATGAAGGAAGTGCTTATTTTTCTTGTTTTTAACCTTGACATTTAAGAAGCGCATAATCTTTCTTTTTCGTTAAAATGCAGTGGGGTCCAAATGAAATGCTCCTGTTTTCAAATAAGGGCTCTTTTTGCGAAAGCCTAATGGTTGACTGCAGGCTACATTATCGTGTTTGTTAACCGACTACGACATGTAAGATTGATATTAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181977 lncRNA downstream 9270 3540820 ~ 3541604 (-) True G160295
TU181971 lncRNA downstream 19401 3531241 ~ 3531473 (-) True G160289
TU181926 lncRNA downstream 41787 3508830 ~ 3509087 (-) True G160245
TU181917 lncRNA downstream 47987 3502511 ~ 3502887 (-) True G160239
TU181916 lncRNA downstream 48459 3501980 ~ 3502415 (-) True G160238
TU181980 lncRNA upstream 19182 3577378 ~ 3577582 (-) True G160298
TU181945 lncRNA upstream 98839 3657035 ~ 3658720 (-) True G160263
TU182013 lncRNA upstream 251228 3809424 ~ 3809754 (-) True G160331
TU182014 lncRNA upstream 251728 3809924 ~ 3810227 (-) True G160332
TU182015 lncRNA upstream 252894 3811090 ~ 3811355 (-) True G160333
CI01000030_03545674_03546876.mRNA mRNA downstream 3821 3545142 ~ 3547053 (-) True CI01000030_03545674_03546876
CI01000030_03491770_03493119.mRNA mRNA downstream 57133 3490119 ~ 3493741 (-) False CI01000030_03491770_03493119
CI01000030_03273527_03314595.mRNA mRNA downstream 236279 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
CI01000030_03213584_03216600.mRNA mRNA downstream 334274 3213111 ~ 3216600 (-) True CI01000030_03213584_03216600
CI01000030_02978356_03013342.mRNA mRNA downstream 537367 2977774 ~ 3013507 (-) True CI01000030_02978356_03013342
CI01000030_03571883_03576733.mRNA mRNA upstream 12829 3571025 ~ 3576907 (-) True CI01000030_03571883_03576733
CI01000030_03632671_03646877.mRNA mRNA upstream 74276 3632472 ~ 3646877 (-) True CI01000030_03632671_03646877
CI01000030_03647991_03655331.mRNA mRNA upstream 89048 3647244 ~ 3655331 (-) True CI01000030_03647991_03655331
CI01000030_03662326_03676734.mRNA mRNA upstream 103788 3661984 ~ 3677572 (-) True CI01000030_03662326_03676734
CI01000030_03706598_03708425.mRNA mRNA upstream 148145 3706341 ~ 3708733 (-) True CI01000030_03706598_03708425
TU181861 other downstream 57774 3361802 ~ 3478867 (-) False G160207
TU181889 other downstream 81712 3466353 ~ 3469162 (-) False G160213
TU181890 other downstream 81712 3466353 ~ 3469162 (-) True G160213
TU180496 other downstream 1018310 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 1099156 2450849 ~ 2451718 (-) True G158914
TU182444 other upstream 1860923 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 1898764 5456960 ~ 5512074 (-) True G160712
TU182698 other upstream 2239101 5797297 ~ 5800426 (-) True G160949
TU183215 other upstream 2575179 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 3142859 6701731 ~ 6704145 (-) True G161511

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041445 True 2158 mRNA 0.44 10 NC_007133.7 20112715 ~ 20126230 (-)