RNA id: CI01000030_03632671_03646877.mRNA


Basic Information

Item Value
RNA id CI01000030_03632671_03646877.mRNA
length 5068
RNA type mRNA
GC content 0.51
exon number 32
gene id CI01000030_03632671_03646877
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3632472 ~ 3646877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAACCACAGAGCTCTACACAAAGGGTGCATGTGTGTGGGTGCCAGACCCAGAAGCTGTGTGGGTGTCTGCACAGCTGCTTCATGACTACCATCCTGGAGACCAACAGATCTTAATCCAACTCAGTGATGGCAGAGGGGAGAATGACCTCACGGCTCTAACCTTCCTCCATGAGCCAGCGGTACTTCACAACTTGCGCGTGCGCTTTCTCGACTACAGTAGCATTTACACCTACTGCGGGATTGTGTTGGTGGCATTAAATCCATATGAACAGTTACCAATCTACGGAGAGGAAGTGATTGACGCTTACAGTGGCCAGGACATAGCTGATATGGAGCCGCATATTTTTTCTGTGGCTGAAGAGGCGTACTGCACTATGACCAGAGAGGAGAAAAACCAATCCATCATAATCAGTGGAGAATCAGGCTCAGGTAAAACTGTATCTGCTAAGTACACCATGCGTTACTTTGCTGTTGTGGGGGGTGCGGCCCAGCAGACCAGTGTGGAGGAGAAAGTTTTGGCATCCAATCCCATCATGGAGGCAATCGGTAATGCAAAAACAACCAGAAACGACAACAGCAGCCGTTTTGGGAAGTATATTGAGATAGGATTTGGTCGTAAAGGGGATATAATTGGGGCAAACATGAGGACCTACTTGTTGGAGAAATCAAGAGTTGTTTTTCAGGCAGCTGAAGAGAGAAACTACCACATCTTCTACCAGCTTTGTGCTTCCAGGGATTTGCCAGAGTTGAGGACACTTAAACTTGATTCTGTGGAGAACTTCCATTACACCAACCAAGGGCAAGATGTGCACATTTCAGGCACAGATGATGTTGTCGAGCTGGAGCGGACAAGAAATGCCTTTACTATACTTGGAGTGCAACCGGACCAGCAGATGGAGCTATTTCGTATACTGGCAGCTATTCTTCATCTGGGGAATGTCAACATACAAGCCAGTGGTCGTGGTGGGGACCGCAGCTACATTGATGTACAAACACCATTTCCTATTATTGCGTACATTTCAGAAAAAAACCGAGCCAATGACCGTTCCTTGGCTCTCTTTGCCAAGCTTTTGGGAGTGGAAGGTGCTCAGATGGCCCAATGGCTATGTCACAGGCGACTAACGGTGGGTGGGGAGATGCTTGTGAAGCCCATGACAGGCCAGCAGGCTAATGAAGCACGGGATGCTCTGGCTAAGCATGTGTACGAGCAACTATTCACATGGACGGTGCAGAGACTCAACTCATCCTTACGAGCACACAGGGAACAGCCCAAATCTTTCATAGGAGTTCTTGATATCTATGGGTTTGAGACTTTTGACAGGAATAGCTTTGAGCAATTCTGTATTAACTACGCCAACGAGAAACTCCAACAGCAGTTCAACAGGCATGTGTTTCAGTTGGAGCAAGAGGAGTACCTGCGAGAGGAACTTCCCTGGAACCGTATTGAGTTCAGCGATAACCAGCCATGCATTGCGCTCATCGAAGGCCAGTTGGGCCTTCTTGATCTTCTGGATGAGGAATGCAGAATGCCGAAAGGCTCAGATGAGAACTGGGCTCGGAAGGTTTACGACCAGCACCTGAATCACAGCCCCCACTTTTGTAAACCGCGCATGTCCAACTCTGCCTTCATCATTGTGCATTTTGCTGATATGGTTCAGTACGAGTGTGACGGCTTTTTAGACAAGAACCGAGACACTGTGTTTGAGGAGCCCATCAATATACTGAGAGCTAGCCAGTCAGAACTAGTTGCAGAGTTGTTCCAGAAGGAGTCAGCAGGGGGATCCCTCTCCAACTCCTCTCTTGCAAACGGGAGCGTACGTTCAGGAAAAAGAGCTCACAGAGAGCACAAATTAACTGTGGGCTTTCAGTTTCGTCAATCCCTGCACCTTTTGATGGACACCTTGAACAGCACCACCCCACATTATGTCCGTTGCATAAAGTCCAATGACCTCAAACAGCCTTTTCTGTGGACGTACGAGGAATTCTTCACCCGCTACCGGGTGCTGCTACGTGGTTCTGTTTCTCAGGATGATGTACGGCGTTCCTGCCGGAGTGCCCTGCCCGACCTTATCCCTGATCCGGAGCAGTACTGTTTTGGCAAGACTAAGGTCTTCTTCCGGGCCGGACAAGTTGCAGTACTGGAGAAGCTGAGAGGAGATCGGCTATGTGCAGCAGCGGTTTTGATCCAAAGCTTGGTGAGAGGATGGCTGCAGCATAGGCGTTATCAGCGGCTCCGGTGGGCCACCTTCATCCTGCAGCGATACACCAGAGGAACCCTAGCCCGAAGGTTGGCGTGGACCCTCCGTTATACACATGCTGCTTTAATCATCCAGAAAACATACCGCATGCTGGCTGTTCGACAGCTGTATATGACCATAAGAGAGGCCACCATCAAAATCCAGGCTTTCATCAGAGGAACCCAGGCTCGTCGCATTTATAGACAGATGCTGACGGAGCGGGCAGTGGTGTTTTTGCAGGCACAGGTGCGAGGTTGGCTGGCCCGGTGCAGTTTCAGGCGCGTCAAAAGTGCAGTGGTGCTTCTGCAGTGTTGCGTGCGCAGGCGAGCGGCACGTAAAGAGCTGTTGCACCTGCGTGCTGAGGCTCGCTCGGTAGAGAAATACAGAGAACTCAATAAAGGCATGGAAGTCAAACTCATGCAGCTGCAGCTCAAAGCCGACCAACAGGCGAGAGAGAGTGCGTCTCTGAGGGAGACTCTTCAGGCCGAGCGAGAAGCTCACAGCTCTGAGCTGGAACAGCTGCGGTCCAGCCTCCTCAAACTCCAGATCCAACTGCAGGAGAATGCAAACAATGCTCCTTTACTCGCAGACAAACAGGAGGAGGACAGGAGGAAAGCTGAGGAGAAGGTCGCCCAAGAGATTCTCCAGCTTACACAGGAAATCCAAGCTCTCCGAATTGAGAGAGATACTTTGGAGAAAGAGAAGGATGATTTGGCTATTCGTTTACAGGATCAAGAAAAAGCTCAGGAGGAGAGCCGCCAGCAGTCTGTGGATCAGGCAGATGCATCAGTGCGAGCAGAGCTGGAAGAGGAGAGGAGGAGATACCAGAGTTTACTTAGAGAGTTCACGAGACTAGAGCAAAGATACGAAAACCTAAGAGATATGAGCCTATTCGCCACCAATGAGCATTCACGTGGACATAGGCGAACAGATTCGACTGTGTCTTTGGAGACTCTGTCGCCCGTCACCACGCCGTTCTCGAACTCGCCCGTCTTCCCTTCACCCGAAGAGGTCAGGAGGATCAGCGTCACGTCACCCACCGACAGGAGACCCTGGAGTCATGAGCAACCTCTGAACATCCTAATGGAGGATATGAGCGTTGCGAAGGACACAGCCGAGAGGATGAAGGGCGAGGATCTCAGATATGCTTACGACGCTGTACGGGTGGCCAACAAGTTTCTAGAGACGCAGCTGTTGTCTCAGAGAGCGCAGTGGGAGCAGGAGATCGCAGCTCTCAGGATGAAACTCCAGCAGGCCCATGACAGAGATACACCTGCAGATCCTGAGATAAATGTACCCGTTCCATCTAAACCTACCGTTTATTGTTCTTTGTACTTTGTTCAGTTGTCATTGTTTGCTTCTTTATGTATGTGTATGAAGGAACTAATGGAGCAGGTGGCGGTTCGAGAGCAGGAATGTGTCCGATTACGTCGAGAGCTCAAGGAACTGAAACACACCGTCACCCTCAGGAGAATCCTGTCTTATGCAGGTCTAGCCATAGCTGCGTCTCAGGACCCAACATCTCCTGCCCCTCAGAAGAGCCAGACACTCAGCGGATTACTGGAGTGCAGGAAAAGAGATGAGAGCAAACTGATCAAACACCTTATAACAGATGTGAGGGCGGAGGGCGTTTTGTCATTGTCCCCTGGACTGGCGGCTCGGGTTCTGTTTCTGTGCGTACGCCAGGCGGACTGTAGCGGCGAACGGACACGGGTGAACGGGCTCTGCAGCGCTGCTGTTAGCGCTATTAAAACTGCCATGAAGAAACACGGCAATGATCTGGACACGACAGCTGCGTGGCTAAAGAACGCTTACCTGCTCAAAGACCTGCTCAACCAGCACTCTCCCCAACAGGATGTGAGGGGCTGCGAAGAGCTGGTGCCTCTGGTGACGGATGTGCAGGAGTCTGTCCGAGCGCTCAGTGATCTGTGTATTCAGGCCTATCAGCAACTTCTGTCCATCTCTGAGAGCCATCTACAACCTATGATTGTCCCAGCAATGCTTGAAAGTGAGACCATCCCTGGTCTGGCTAGTTCATCTGTAAAGCTGAGTGGCGGTCGCAAGCGCGCGGGTTCGGACCCCCGGCCTCCTGCCAGTACAGAGGGGACCACTATGTCTGCAGTCTTGAGGGAACTGTCAGCGCTGCACACAGCCCTGTCCCGTCAGGATCTACCCTCGGCCCTGCTGGAACAAGCTTTCCATCAGCTCATGTACCTGCTGGCCGCCACCACCCTCAACAGCCTAATGCTGCGTAAGGACATGTGCTGCTGGAACCGCGGCCTTCAGATCAGGTATAATGTGAGTTTACTGGAGGAGTGGCTGCGGAGTCGTTCACTGCAGACAGGGGGCGCTGTGACCGCTCTGGAGCCTCTGATACAGGCAGCACAGCTTCTTCAAATGAGCAAGAAGACTGAAGCAGATGGACAAGCCATGGTCCAAACCTGCAATGCATTGTCCAACCAGCAGGGGCTGCTGAAGGGGCGCTCTGAGGGGCAACCTCCACAGCTTCTGATGGATGTCAGACGGGTATTCCCCGTCACGTTCCCTTATCAGCCTCCACCACAAGTCAGTGCCGCCCAACTCGAAATCCCAGAGTCCCTCAAGATCTCCTTCCTACGCAGAGTTTGAATGTGGGTGTTCCTTTACCTCCTGAAATGCATTTATTTTTGCTTTTGTTGCCTTAACAACGTCACTTTAAAATGCTGTCTGAGCATTTTGTATACATTATGTTAGCATGCTATTTTGGGCCCATTGTAAATGTTTAATTATGTTAGCTTGACAAAGCCAACATATTAGCCATTCCTCCCTCTTTACGTTAAAAAATAAA

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181980 lncRNA downstream 54890 3577378 ~ 3577582 (-) True G160298
TU181977 lncRNA downstream 90868 3540820 ~ 3541604 (-) True G160295
TU181971 lncRNA downstream 100999 3531241 ~ 3531473 (-) True G160289
TU181926 lncRNA downstream 123385 3508830 ~ 3509087 (-) True G160245
TU181917 lncRNA downstream 129585 3502511 ~ 3502887 (-) True G160239
TU181945 lncRNA upstream 10158 3657035 ~ 3658720 (-) True G160263
TU182013 lncRNA upstream 162547 3809424 ~ 3809754 (-) True G160331
TU182014 lncRNA upstream 163047 3809924 ~ 3810227 (-) True G160332
TU182015 lncRNA upstream 164213 3811090 ~ 3811355 (-) True G160333
TU182033 lncRNA upstream 322916 3969793 ~ 3970072 (-) True G160351
CI01000030_03571883_03576733.mRNA mRNA downstream 55565 3571025 ~ 3576907 (-) True CI01000030_03571883_03576733
CI01000030_03551269_03557640.mRNA mRNA downstream 74276 3550874 ~ 3558196 (-) True CI01000030_03551269_03557640
CI01000030_03545674_03546876.mRNA mRNA downstream 85419 3545142 ~ 3547053 (-) True CI01000030_03545674_03546876
CI01000030_03491770_03493119.mRNA mRNA downstream 138731 3490119 ~ 3493741 (-) False CI01000030_03491770_03493119
CI01000030_03273527_03314595.mRNA mRNA downstream 317877 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
CI01000030_03647991_03655331.mRNA mRNA upstream 367 3647244 ~ 3655331 (-) True CI01000030_03647991_03655331
CI01000030_03662326_03676734.mRNA mRNA upstream 15107 3661984 ~ 3677572 (-) True CI01000030_03662326_03676734
CI01000030_03706598_03708425.mRNA mRNA upstream 59464 3706341 ~ 3708733 (-) True CI01000030_03706598_03708425
CI01000030_03713071_03713513.mRNA mRNA upstream 65748 3712625 ~ 3713787 (-) True CI01000030_03713071_03713513
CI01000030_03719059_03726730.mRNA mRNA upstream 71658 3718535 ~ 3727455 (-) True CI01000030_03719059_03726730
TU181861 other downstream 139372 3361802 ~ 3478867 (-) False G160207
TU181889 other downstream 163310 3466353 ~ 3469162 (-) False G160213
TU181890 other downstream 163310 3466353 ~ 3469162 (-) True G160213
TU180496 other downstream 1099908 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 1180754 2450849 ~ 2451718 (-) True G158914
TU182444 other upstream 1772242 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 1810083 5456960 ~ 5512074 (-) True G160712
TU182698 other upstream 2150420 5797297 ~ 5800426 (-) True G160949
TU183215 other upstream 2486498 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 3054178 6701731 ~ 6704145 (-) True G161511

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041452 False 3092 mRNA 0.49 21 NC_007133.7 20267522 ~ 20289948 (-)