RNA id: TU182014


Basic Information

Item Value
RNA id TU182014
length 304
lncRNA type intronic
GC content 0.37
exon number 1
gene id G160332
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3809924 ~ 3810227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCAGGGGTCAGAAAGTAAAAGTCCTGCCATATTTTTATTCCACCCACTGAAGCAGTGTTAAAGTTAATGAGATAAATAAGTGATTAATTGAGTGATGATTGACCATTATTGAAGATACCTGATGTTAACAAGCAGAATCACCAAAGGAGAAAATCACAATTTTTAAGACACCATCACAGAGATCAGGGTTTGATTTAGTTGGGCTCTTGACCCTTGACTTTTTAAATATTAGATTTAGTTTGGGCTGCTGTAACTGAGTTATAACAACCAGACAAGCAAAGAGAAAAGATGATCAGGTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182013 lncRNA downstream 170 3809424 ~ 3809754 (-) True G160331
TU181945 lncRNA downstream 151204 3657035 ~ 3658720 (-) True G160263
TU181980 lncRNA downstream 232342 3577378 ~ 3577582 (-) True G160298
TU181977 lncRNA downstream 268320 3540820 ~ 3541604 (-) True G160295
TU181971 lncRNA downstream 278451 3531241 ~ 3531473 (-) True G160289
TU182015 lncRNA upstream 863 3811090 ~ 3811355 (-) True G160333
TU182033 lncRNA upstream 159566 3969793 ~ 3970072 (-) True G160351
TU181961 lncRNA upstream 198102 4008329 ~ 4010895 (-) True G160279
TU182043 lncRNA upstream 288038 4098265 ~ 4099115 (-) True G160361
TU182058 lncRNA upstream 304520 4114747 ~ 4114974 (-) True G160376
CI01000030_03730577_03740244.mRNA mRNA downstream 69680 3729814 ~ 3740244 (-) True CI01000030_03730577_03740244
CI01000030_03719059_03726730.mRNA mRNA downstream 82469 3718535 ~ 3727455 (-) True CI01000030_03719059_03726730
CI01000030_03713071_03713513.mRNA mRNA downstream 96137 3712625 ~ 3713787 (-) True CI01000030_03713071_03713513
CI01000030_03706598_03708425.mRNA mRNA downstream 101191 3706341 ~ 3708733 (-) True CI01000030_03706598_03708425
CI01000030_03662326_03676734.mRNA mRNA downstream 132352 3661984 ~ 3677572 (-) True CI01000030_03662326_03676734
CI01000030_03847350_03849167.mRNA mRNA upstream 36769 3846996 ~ 3849441 (-) True CI01000030_03847350_03849167
CI01000030_03881956_03885985.mRNA mRNA upstream 71351 3881578 ~ 3886034 (-) True CI01000030_03881956_03885985
CI01000030_03906284_03908070.mRNA mRNA upstream 95872 3906099 ~ 3908772 (-) True CI01000030_03906284_03908070
CI01000030_03919724_03924153.mRNA mRNA upstream 109426 3919653 ~ 3924153 (-) True CI01000030_03919724_03924153
CI01000030_03927287_03932124.mRNA mRNA upstream 117000 3927227 ~ 3932164 (-) True CI01000030_03927287_03932124
TU181861 other downstream 316824 3361802 ~ 3478867 (-) False G160207
TU181889 other downstream 340762 3466353 ~ 3469162 (-) False G160213
TU181890 other downstream 340762 3466353 ~ 3469162 (-) True G160213
TU180496 other downstream 1277360 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 1358206 2450849 ~ 2451718 (-) True G158914
TU182444 other upstream 1608892 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 1646733 5456960 ~ 5512074 (-) True G160712
TU182698 other upstream 1987070 5797297 ~ 5800426 (-) True G160949
TU183215 other upstream 2323148 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 2890828 6701731 ~ 6704145 (-) True G161511

Expression Profile