CI01000030_03881956_03885985


Basic Information

Item Value
gene id CI01000030_03881956_03885985
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3881578 ~ 3886034 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03881956_03885985.mRNA
AGATATTGACGACAAATATTGAATTCACTTGGAACATTCGGTGTCCATAATGGCGCTGTTTGGCAGTGTATTTAGACAACTGTTTGAGTGTTTTGCTCACTTCTTGCGCAGAAGAGAGACACCTCAGAGAGCACAGCATTGTGTAGCGCAAGAATTAGCGGCGGTAGAGAAACTTCCAGAGGAGTGTGAGGCCTTCGACTTCAATGCCAGTGGCAGGAAGTGCAGGAAGAGACGCTGCAAGGTACCTGAGAAGTACCAGCTTGGAGAGAGGGAGGAGGAAAGAGAGGTGAAGTTCAACAAGGGAGGCAGTCATAAAGATGAGGCTGAAAGAGAAACAGTAACACTCGGCCTTGAAAAGGTAAAGAAGAGAGGACATGTACACCAGAAAAAAAGAGAGATGCACAGTCTGGAAAAGTTGATGGAGGAAGGAAGTGAGCTTAGAGAAGCTGGAGAAAAGAAAAGGAAGGAGAGAAAACGGAAAAAACAAAAGATAACAGAGCCAACGGCACTTCTTGTGGAGGTCAAACCTGTGCATACTACAGTCAGATCTTCATTCTTAAAGCCAACAGAGGGAGAGCTACCAATGCTTCCAAGTGTCTCCGGACACCACACTCTACCAGCCACTCGCTTCAAACCTCTGCCACCAGTGACAAAACCACCCGTGCATCCTCAGAAACCAGATCCAGCACCTGAGGATGTGTCATCCCTGCCATGTTCTCCGCTTCAAGTGGATCCTCCCAAACTGTTGGCAGTTCCTCTATGTCCTGATGAAGTTGTTTCCTTCCGACGCTCTTCATCCCAAATGCTTCCATTGGCGGTTCCTCCACGCCCCACTCCAGTACCTGATGAACTGTTTTCCATCCGATGCTCTTCATCCGAAGAGCGTCATCCCAAACGACTTCCTCCGAGTCCCACTCCTGCACCTGATGAAGTCGTTGCTCTGCCACGTCCTCCCAGCCGGAAGCCTCAGCCTTTCACTTCTTCCCTGTTTGAGCCATCTCCACAACTTATGCTGGTTGACATAGAGGATGAGGAGAACGAGTATGTGGAGTACACAGGGATGACCATCCGGGCCAGTGACTTACTGAAGTCTGAATGCCCCCAAATGCAGCAGGCTGAAATGAGACCCAGAAACATGGTTGCTTGGTTGGAGAAGGACAGCAAGGTGCAGGAGGAAGTGTGGGCAAGAGAAGTGGTGGAGGTCCAGGGATTTGAGGAAGAGGAAGGTGACCCCAGTGAAATGGGAGACTCCAAGGCCATACAAGGCCATTCGGATGATGCCTCTCAGATCGATGAGCTTATGATGAAGCTCTTCTGTGTAACCTCTCCTGACGGTCCCAAGAATGAGACCCAGCACAATAATTCCCCTGTCTCTTCACTGTTCTCTAACCATTTTTCACAGCTGCCACTCAAACGAAGCCATCTTAAAGGTTCTAATGCTCAAGCTGAGTTGTGTGAGGGTGTTGAAGTGCATTTCAAACACCCACATCTAAGGCTGGCTGAGGCCATTAGGAGCAGAGACAGCACTGTAATGTGTGTATTGTTATCTTGGATGTTTTTAGAGAAGGTGCCAAATCCTTTGGATTCAACATTCCAAGGTGTCTCAATGCAGTATACTGGATAATTCTTAGTTATGTAGTCGAGGGTCAGTAAAGTTTTTTTGGAAAATGTTTTTGAAAGAAGTCTCTAACCAGGTCTGCATTTATTTGATCAAAAATACAATAAAAACAGTAATATTGTGAAATATTATTAAAAATGAAAATAACTGTTTGTACTGTATTTTAAATGTAATTTATTTCTGCGATGCAAAGCTGAATTTTCAGCACCATTACTTAGGTCCTCAGTGTCACATGATCCTTCAGAAATCAATGTTGAAAACAGTTGTGCTGCTTAATATTTTTGTGGAAACTAAGATATATTTCTCAGGATTCGCTGAATAGAAAATTCAAAACAACAGGATATAGAATAGAAATCTTTTGTATTTTACGTTGGATTAATTAAA

Function

NR:

description
hypothetical protein cypCar_00010047

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03881956_03885985.mRNA True 2002 mRNA 0.45 2 3881578 3886034

Neighbor

gene id symbol gene type direction distance location
CI01000030_03847350_03849167 LINGO3A, LINGO3 coding downstream 32137 3846996 ~ 3849441 (-)
CI01000030_03785020_03812002 ATP8B3 coding downstream 68795 3784688 ~ 3812783 (-)
CI01000030_03730577_03740244 PIAS4, PIAS4A coding downstream 141334 3729814 ~ 3740244 (-)
CI01000030_03719059_03726730 MAP2K2B, MAP2K2, MAP2K2A, MP2K2, TMEK coding downstream 154123 3718535 ~ 3727455 (-)
CI01000030_03713071_03713513 NA coding downstream 167791 3712625 ~ 3713787 (-)
CI01000030_03906284_03908070 NA coding upstream 20065 3906099 ~ 3908772 (-)
CI01000030_03919724_03924153 OAZ1A coding upstream 33619 3919653 ~ 3924153 (-)
CI01000030_03927287_03932124 NA coding upstream 41193 3927227 ~ 3932164 (-)
CI01000030_03943397_03953732 NA coding upstream 56674 3942708 ~ 3954033 (-)
CI01000030_03954516_03959210 DOT1L coding upstream 68099 3954133 ~ 3959210 (-)
G160333 NA non-coding downstream 70223 3811090 ~ 3811355 (-)
G160332 NA non-coding downstream 71351 3809924 ~ 3810227 (-)
G160331 NA non-coding downstream 71824 3809424 ~ 3809754 (-)
G160263 NA non-coding downstream 222858 3657035 ~ 3658720 (-)
G160298 NA non-coding downstream 303996 3577378 ~ 3577582 (-)
G160351 NA non-coding upstream 83759 3969793 ~ 3970072 (-)
CI01000030_04012150_04013791 NA non-coding upstream 122295 4010930 ~ 4015095 (-)
G160361 NA non-coding upstream 212231 4098265 ~ 4099115 (-)
G160376 NA non-coding upstream 228713 4114747 ~ 4114974 (-)
G160381 NA non-coding upstream 232894 4118928 ~ 4119136 (-)
CI01000030_03491770_03493119 CELF5A other downstream 388478 3490119 ~ 3493741 (-)
G160213 NA other downstream 412416 3466353 ~ 3469162 (-)
G158980 NA other downstream 1349014 2499584 ~ 2536375 (-)
G158914 NA other downstream 1429860 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 1722287 2155584 ~ 2157390 (-)
G160713 NA other upstream 1533085 5419119 ~ 5423513 (-)
G160712 NA other upstream 1570926 5456960 ~ 5512074 (-)
G160949 NA other upstream 1911263 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 2247341 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 2815021 6701055 ~ 6704745 (-)

Expression


Co-expression Network