G160949


Basic Information

Item Value
gene id G160949
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5797297 ~ 5800426 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU182698
TCTATCTGCCTGGCGACCGTATATAGATGGGAAAAGTCTGTCAAAACCATGAAACATAGCGGATCATTCTGAATAAATATTTCCCGCCACCTCACGATGCCCAAACTGCTTTTCTCGAAGATTCGGATCTACGAGTTCAAGGATCTCATTCGGAATAAGAAACAGCCAATAACGACCGTTTGACACACGGGCCAAAGCTAGCAGATCTGCTAGAAAATAGAGACTACCTGGCTGCCTTTCGTTCATTTCTCCAGTCTGAGTTTAGTGCGGAGAACATTGATTTTTGGCTTGCCTGCAGGGAATATAAGCAAATGACTTCATCTGGCAGTCTCTCTAACAAGGCAGCAGATATCTACAAAGAGTTTCTCCATCCCATGGCTCAAAAAGAGGTCAACATCGACCATCACACTCGTGAGAAGATCAAGATATCCTTGGTGAAGCCTGACCTCACTTGTTTTGATGAAGCCGAGATGCATATATACAGACTGATGGAGAAAGACTCCTGCCCACGGTTCCTCAAATCTGAGGCCTATCAGAACCTGAGGAACACAGCCAGGAAACCAATGTAGACCTATACTGTACCAATGACAACTATTTCACTGGAAAAAGGTTTCTTAATGAACCAGCGCACAGAAAGAGGACATATGCACGTGGTTTAGAGGAAATGACTGAGGAGAACAGAAAGTGTATGTGGTATGCTCAACTTCATTGGTTTTGAGTGATAAGATGAATGAGAAAAAATAAAAATGTCACACAGGAAATGATCTAGAATGAAGGTATATTACATGGTTTCCACTGTTATTTGACAGATGGGCTGTTTTGTTTTATGAAATGGGTGTTTTCTATAAAAGTTTTTTACAGTTAGTTGAGACCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182698 True 877 TUCP 0.42 4 5797297 5800426

Neighbor

gene id symbol gene type direction distance location
CI01000030_05791222_05793350 NA coding downstream 3947 5791053 ~ 5793350 (-)
CI01000030_05784109_05788689 NA coding downstream 8608 5783816 ~ 5788689 (-)
CI01000030_05561747_05564633 NA coding downstream 232587 5561747 ~ 5564710 (-)
CI01000030_05519604_05542781 NA coding downstream 254490 5519546 ~ 5542807 (-)
CI01000030_05477128_05482150 NA coding downstream 315147 5477128 ~ 5482150 (-)
CI01000030_05801355_05807277 NA coding upstream 895 5801321 ~ 5807277 (-)
CI01000030_05996557_05996952 NA coding upstream 195600 5996026 ~ 5997542 (-)
CI01000030_06042392_06063112 VTG1, VTG7, VTG6, VTG4 coding upstream 241828 6042254 ~ 6063126 (-)
CI01000030_06070218_06078371 VTG1 coding upstream 269716 6070142 ~ 6078378 (-)
CI01000030_06079733_06090776 NA coding upstream 279265 6079691 ~ 6090776 (-)
G160961 NA non-coding downstream 21378 5772578 ~ 5775919 (-)
G160942 NA non-coding downstream 106765 5684834 ~ 5690532 (-)
G160940 NA non-coding downstream 114902 5681874 ~ 5682395 (-)
G160833 NA non-coding downstream 120013 5677082 ~ 5677284 (-)
G160824 NA non-coding downstream 134353 5661423 ~ 5662944 (-)
G161023 NA non-coding upstream 53211 5853637 ~ 5854418 (-)
G161013 NA non-coding upstream 75941 5876367 ~ 5878811 (-)
G161034 NA non-coding upstream 90983 5891409 ~ 5897974 (-)
G161040 NA non-coding upstream 97772 5898198 ~ 5898398 (-)
G160712 NA other downstream 285223 5456960 ~ 5512074 (-)
G160713 NA other downstream 373784 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 2304197 3490119 ~ 3493741 (-)
G160213 NA other downstream 2328135 3466353 ~ 3469162 (-)
G158980 NA other downstream 3264733 2499584 ~ 2536375 (-)
CI01000030_06131710_06138371 NA other upstream 332949 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 900629 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 942832 6746960 ~ 6752411 (-)
G163065 NA other upstream 1124057 6924483 ~ 6925657 (-)
G163139 NA other upstream 1349048 7149474 ~ 7150144 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G190304 NA non-coding NC_047606.1 CM018552.1 3497129 ~ 3497399 (-)
tiger barb (Puntius tetrazona) si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 misc NC_056720.1 CM032089.1 12045469 ~ 12049538 (-)