G163139


Basic Information

Item Value
gene id G163139
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7149474 ~ 7150144 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU185332
TTTACAGTTCAGACATCACTCTGTAGGCGTTTGAAGGACTGAACCGTGGGGCAGACGGCGCCCCAGTCAACGGGCTTACGATATTCCCCCTTCTCCAGTAGGTACTGGCGCCCCCTGTAGTTTGGGTGCTCGTAGAAGATCCAGATCCCATCCAGCACCTTACAGGAGTGGACCTCGCGTGTACGGAAGCGGTCCACCACAGATGGACAGTCCTCGGTGGTCTCGTACACCTGGCCGGCAAAATCTCCTTTGTCATAGAGTTGGATCTTGTACTCAGAACCGCTTACCTGGAGAGGAAGGGACACCTATTGAACATCAAATACGTATTACACAATGTTTTGCAATGCATGTGTGCGACTTACAAAGTGGATCATCTTGCAGGAGCAGAGGCGGTCGTTCAGACCCATCCAGCGTTGGTAATCTGGGTACTCGCCCCGGGTCAGAACATACTGGTAGCCCATGAAGTTGGGCCTCTCATAGACCACCCAAGACCCACTCTCCACGCGGATGGAGTTACACCGGTTCAGGTAGGCATGGAAGTCCGAACAGTCGCTGTCGCACTCATACCGACGGCCCTGGAAGTTCTTGTCCTCGTAGAAAATGATCTGTATGAAGAAGACATTGGAATATTTATTTCATCCTTGGATATTGTTTTAATAAACTACCTCTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU185332 True 671 TUCP 0.51 1 7149474 7150144

Neighbor

gene id symbol gene type direction distance location
CI01000030_07118097_07122890 KRT97, KRT96 coding downstream 26494 7118097 ~ 7122980 (-)
CI01000030_07072355_07077515 RASM, MGC80266, MRAS coding downstream 71959 7071881 ~ 7077515 (-)
CI01000030_07008035_07011384 NA coding downstream 138090 7007833 ~ 7011384 (-)
CI01000030_07002565_07003644 NA coding downstream 145529 7002235 ~ 7003945 (-)
CI01000030_06985089_06988057 NA coding downstream 161370 6984257 ~ 6988104 (-)
CI01000030_07154555_07155973 NA coding upstream 4411 7154555 ~ 7155973 (-)
CI01000030_07158026_07159540 NA coding upstream 7551 7157695 ~ 7159540 (-)
CI01000030_07166355_07167347 NA coding upstream 15052 7165196 ~ 7167347 (-)
CI01000030_07174087_07174921 NA coding upstream 23359 7173503 ~ 7175154 (-)
CI01000030_07249061_07250124 NPB coding upstream 98182 7248326 ~ 7250175 (-)
G163147 NA non-coding downstream 10900 7132655 ~ 7138574 (-)
G163146 NA non-coding downstream 17984 7131115 ~ 7131490 (-)
G163118 NA non-coding downstream 64896 7067348 ~ 7084578 (-)
G163108 NA non-coding downstream 111262 7037748 ~ 7038212 (-)
G163103 NA non-coding downstream 128837 7020363 ~ 7020637 (-)
G163161 NA non-coding upstream 31530 7181674 ~ 7183072 (-)
G163177 NA non-coding upstream 73847 7223991 ~ 7306353 (-)
G163240 NA non-coding upstream 161129 7311273 ~ 7311507 (-)
G163242 NA non-coding upstream 169123 7319267 ~ 7319998 (-)
G163065 NA other downstream 223817 6924483 ~ 6925657 (-)
CI01000030_06747047_06752255 NA other downstream 397063 6746960 ~ 6752411 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other downstream 444729 6701055 ~ 6704745 (-)
CI01000030_06131710_06138371 NA other downstream 1011068 6131090 ~ 6138406 (-)
G160949 NA other downstream 1349048 5797297 ~ 5800426 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other upstream 585292 7735436 ~ 7737720 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other upstream 638653 7788797 ~ 7792198 (-)
CI01000030_08185866_08194632 NA other upstream 1041775 8184897 ~ 8197266 (-)
G163873 NA other upstream 1783269 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 2137062 9276431 ~ 9294802 (-)

Expression


Co-expression Network