RNA id: TU185332


Basic Information

Item Value
RNA id TU185332
length 671
RNA type TUCP
GC content 0.51
exon number 1
gene id G163139
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7149474 ~ 7150144 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTACAGTTCAGACATCACTCTGTAGGCGTTTGAAGGACTGAACCGTGGGGCAGACGGCGCCCCAGTCAACGGGCTTACGATATTCCCCCTTCTCCAGTAGGTACTGGCGCCCCCTGTAGTTTGGGTGCTCGTAGAAGATCCAGATCCCATCCAGCACCTTACAGGAGTGGACCTCGCGTGTACGGAAGCGGTCCACCACAGATGGACAGTCCTCGGTGGTCTCGTACACCTGGCCGGCAAAATCTCCTTTGTCATAGAGTTGGATCTTGTACTCAGAACCGCTTACCTGGAGAGGAAGGGACACCTATTGAACATCAAATACGTATTACACAATGTTTTGCAATGCATGTGTGCGACTTACAAAGTGGATCATCTTGCAGGAGCAGAGGCGGTCGTTCAGACCCATCCAGCGTTGGTAATCTGGGTACTCGCCCCGGGTCAGAACATACTGGTAGCCCATGAAGTTGGGCCTCTCATAGACCACCCAAGACCCACTCTCCACGCGGATGGAGTTACACCGGTTCAGGTAGGCATGGAAGTCCGAACAGTCGCTGTCGCACTCATACCGACGGCCCTGGAAGTTCTTGTCCTCGTAGAAAATGATCTGTATGAAGAAGACATTGGAATATTTATTTCATCCTTGGATATTGTTTTAATAAACTACCTCTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185340 lncRNA downstream 10900 7132655 ~ 7138574 (-) True G163147
TU185339 lncRNA downstream 17984 7131115 ~ 7131490 (-) True G163146
TU185278 lncRNA downstream 64896 7067348 ~ 7084578 (-) True G163118
TU185267 lncRNA downstream 111262 7037748 ~ 7038212 (-) True G163108
TU185262 lncRNA downstream 128837 7020363 ~ 7020637 (-) True G163103
TU185315 lncRNA upstream 1731 7151875 ~ 7152529 (-) True G163135
TU185314 lncRNA upstream 2071 7152215 ~ 7152529 (-) False G163135
TU185298 lncRNA upstream 2124 7152268 ~ 7152529 (-) True G163135
TU185366 lncRNA upstream 31530 7181674 ~ 7182976 (-) False G163161
TU185368 lncRNA upstream 31530 7181674 ~ 7183072 (-) True G163161
CI01000030_07118097_07122890.mRNA mRNA downstream 26494 7118097 ~ 7122980 (-) True CI01000030_07118097_07122890
CI01000030_07072355_07077515.mRNA mRNA downstream 71959 7071881 ~ 7077515 (-) True CI01000030_07072355_07077515
CI01000030_07008035_07011384.mRNA mRNA downstream 138090 7007833 ~ 7011384 (-) True CI01000030_07008035_07011384
CI01000030_07002565_07003644.mRNA mRNA downstream 145529 7002235 ~ 7003945 (-) True CI01000030_07002565_07003644
CI01000030_06985089_06988057.mRNA mRNA downstream 161370 6984257 ~ 6988104 (-) True CI01000030_06985089_06988057
CI01000030_07154555_07155973.mRNA mRNA upstream 4411 7154555 ~ 7155973 (-) False CI01000030_07154555_07155973
CI01000030_07158026_07159540.mRNA mRNA upstream 7551 7157695 ~ 7159540 (-) True CI01000030_07158026_07159540
CI01000030_07166355_07167347.mRNA mRNA upstream 15052 7165196 ~ 7167347 (-) True CI01000030_07166355_07167347
CI01000030_07174087_07174921.mRNA mRNA upstream 23359 7173503 ~ 7175154 (-) True CI01000030_07174087_07174921
CI01000030_07249061_07250124.mRNA mRNA upstream 98182 7248326 ~ 7250175 (-) True CI01000030_07249061_07250124
TU185223 other downstream 223817 6924483 ~ 6925657 (-) True G163065
TU183403 other downstream 397063 6743298 ~ 6745350 (-) True G161515
TU183401 other downstream 397158 6743258 ~ 6745350 (-) False G161515
TU183402 other downstream 397158 6743298 ~ 6745350 (-) False G161515
TU183395 other downstream 444729 6701731 ~ 6704145 (-) True G161511
TU185612 other upstream 585292 7737975 ~ 7738004 (-) True G163364
TU185614 other upstream 638653 7792243 ~ 7792382 (-) True G163366
TU185749 other upstream 1041775 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 1783269 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 2137062 9287206 ~ 9302149 (-) True G163710

Expression Profile