G163873


Basic Information

Item Value
gene id G163873
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8933413 ~ 8933982 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU186160
ATGGATGGATGGATGGGTGGATGTGTGGATGCATGGATGGGTGGGTGGGTGGGTGGATGGATGGATGGATGGGTGGGTGGGTGGATGGATGGATGGACGGAGGGATGGGTGGATGATGTGGATGTATGGATGGGTGGATGGACAGATGAATTGGTGGATGGATGGACAAATGAATGGATGGATGGATGGAAGGACAGATGGACGGAGGGATGGATTGATGGATGGAAGGACGGACGGACGGAGGGATGGATGGATCGATGGATGGGTGGATGTGTGGATGTGCGGATGGATGGGTGGGTGGGTGTATGGATGGACAGATGGCTGGATGGATGGACGGATGGCTGGATGGATGGATGGATGGATAGATGAGTGGATGAGTGGATGGATGGGTGGGTGGGTGGATNTGGGTGGGTGGATGGATGGATGGATGGGTGGGTGGATGGGTGGATGTGTGGATGCATGGATGGGTGGATGGATGGGTGAATGGGTGGATGGATGGATGGATGGACGGAGGGATGGATTGATGGATGGAAGGACGGACGGACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU186160 True 546 TUCP 0.56 2 8933413 8933982

Neighbor

gene id symbol gene type direction distance location
CI01000030_08919811_08923927 NA coding downstream 9486 8919555 ~ 8923927 (-)
CI01000030_08880986_08884756 TMPRSS12, CELA1 coding downstream 48642 8880953 ~ 8884771 (-)
CI01000030_08825422_08836502 NA coding downstream 96286 8825241 ~ 8837127 (-)
CI01000030_08804429_08811448 NA coding downstream 120843 8804270 ~ 8812570 (-)
CI01000030_08742145_08754205 NA coding downstream 177812 8742040 ~ 8755601 (-)
CI01000030_08934545_08939716 NA coding upstream 261 8934141 ~ 8939719 (-)
CI01000030_09038299_09059689 NA coding upstream 104266 9038248 ~ 9060020 (-)
CI01000030_09176691_09178066 NA coding upstream 242663 9176645 ~ 9178066 (-)
CI01000030_09225959_09236989 NA coding upstream 291350 9225332 ~ 9239282 (-)
CI01000030_09253701_09256358 NA coding upstream 318133 9252115 ~ 9257790 (-)
G163872 NA non-coding downstream 66 8932505 ~ 8933347 (-)
G163632 NA non-coding downstream 58308 8874451 ~ 8875105 (-)
G163610 NA non-coding downstream 132847 8800207 ~ 8800566 (-)
G163598 NA non-coding downstream 146477 8786674 ~ 8786936 (-)
G163605 NA non-coding downstream 150481 8782692 ~ 8782932 (-)
G163875 NA non-coding upstream 1159 8935141 ~ 8935887 (-)
G163970 NA non-coding upstream 215662 9149644 ~ 9150346 (-)
G163971 NA non-coding upstream 231952 9165934 ~ 9168180 (-)
G163650 NA non-coding upstream 241332 9175314 ~ 9176251 (-)
CI01000030_08185866_08194632 NA other downstream 740927 8184897 ~ 8197266 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 1141031 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 1195409 7735436 ~ 7737720 (-)
G163139 NA other downstream 1783269 7149474 ~ 7150144 (-)
G163065 NA other downstream 2007756 6924483 ~ 6925657 (-)
CI01000030_09277337_09294501 NA other upstream 353224 9276431 ~ 9294802 (-)
G164071 NA other upstream 541206 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 1181533 10102944 ~ 10133765 (-)

Expression


Co-expression Network