CI01000030_09253701_09256358


Basic Information

Item Value
gene id CI01000030_09253701_09256358
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9252115 ~ 9257790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_09253701_09256358.mRNA
AGAAAGAATGCTGAGCATGTGCATGCATGTTATCCTGCTTGTTCAAATTAGTTATTAAAGTTTCCTAAGAGGAATACAACGTTTGTCTTGTCTACATGAAGACATAACAAAATTGGCGACGAGGAAGTTTTTACAAGATATCCTGAAGTAGGCATCAGTAAGTGCTCCATTTCCCAGTCCTCTTTTGCCTTGTCCCGGTGAGCCTGCTATACCACTAGTAACATGGCTGAAGATGTTTCAGAACTACATGCTTGTCATCAATGCTACTGGGGATTCCTGGCCAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCTATACCACTAGTAACATGGCTGAAGATGTTTCAGAACTACATGCTTGTCATCAATGCTACTGGGGATTCCTGGCCAGAAGCCAGAAAACGGGCTTTGCTTCTTCGCTGCCTCAGAACTGAAGGTCAGAGACTGTTTTATACATTGCCCAATACCGGTGCCGATCTGGCAGATGCTATTAAAGCTTTAGAAGAGCACTTCATTCTAAAAAGAAATGTGGTCGTGGAAAGACACGCCTTCAGGAAACGAGTGCAGAGGACAGATGAAACGGTAGTGCAATACATTGCTGCATTGAGAGATTTGGCGACTACTTGTGAATTTGCTGACAATCTTGACGATATGCTGTGTGACCAGCTTGTAGAAAACATTGCTAACCCTCGCATTCGTGAAAGATTATTAGTGGAATCTAAATGGAGACTGCAATTACAATTGCCACACAGCTAGAGGCCGCTGATGCCCAGGCAAAATCAATGGCTACAAGCAACCCTGCTCCAGTACAAGCCGTACATGCCACTCCTGCTTCTGGACGACAGCGTCCTAAGGCCAAATTCAAAGCACATACCTCATCAAAACCCTCTGCTTCTGCTCCGTCAGCTCAGACATGCTTCCGCTGTGGCTCTGCTAGTCATCTTGCAAACGCACAGAACTGCCCTGCTGCATCTGCTAAATTGCATTCAGTTGAATTACCAGAGGTCTGTATTCTCTATCTACCTGGAGCAACTGACCGTTTGATGTGTGATGTGACCATAAATGCTACACCTGCTGCCACCCCTGTGTCTCTTCAACTCACAGTGGACTCTGGTTCATCAGTGTCCATCCTGCCAAAACAATTGTATGAGCAGCATTTTCACACTGTACCATTACAATCTCCTATTGCCCGTTTAGTTACTTACTTACAAGAGCCAATTTCAGTACTAGGATGTTTACCTGCAACGGTATCCAAATATGGCATTACCTGTCCTGCACACTTCTTCATAGTTGACAATGGCACAGCTTTGCTAGGCATGGACCTGATTAAGGGACTCCAGCTTCGATTTGATGGACACACTGTTCTGCCGCCGCCACAATCCACTTCAGTCTGTGCCCTCTCCACTCCTCCATCACAGCGTGCTGCATTGGGCTGTGTAAAAAATTTTACACACAAGGTTAACATTTCTGACTCTGTACCTCCTGTCAGACACAAATTGCGTTGCTTACCTTTCTCTGTGAGAGATGCTGTTTCCGCAGAACTGGAACGACTCTTGCATGCAGGTGTAATTGAAAGGATTGACTCCTCTCCATGGGTTTCCCCAATTGTTGTGGTCCAAAAGAAAACTGGGGGGATCCGCATGTGTGTGGATCTGGTACCTTATGGCTTGGCATCTGCTCCATCTGCATTCCAAAAGATGATGGTTGTCATTCTAAAAGGACTCCAGAATGTTACAAATTATCTGGATGACATCATCGTGTGGGGACGCTCGCTACAAGAGCATGATCAAGCATTAGAGAATGTGCTGCAACGTCTCAAAGATGCTGGGTTGGTGCTGAATGAGTCTAAATGTCAATTCAGAAAGCAGAGCTTGAAGTTTTTAGGACACATGATGACGTCACAGGGTATTCAGCTAGATCAGGAACACCTCTCTGCAATAATCGATGCACCTGCACCATCGGATGCTGTTCAGTTGCGTTCTCTGCTGGGCCTCCTCTCATGGTACAACAAATTTATTTCCAATTTCGCAATGCCTCTGCGTGCATGCCTGAGAGATGAGAGTGGATTTCGTTGGTCTGATGAAGCCCAACAAAGCTTGGCTGAGGTAAAAAAGCTACTGGTACACAGTCCTGCTCTTGCACTGTTTGACCTGGGTCTGCCAGTGGTAATTTCTACTGATGCGTCTGCTTACGGACTAGGTGCCGTCTTCGCACAAATATGCACTGATGGTCAAGAATGTACTGTTGCTTTCGCATCCAGAACACTCACTCCAGCTGAACAGAAATACTCCACTGTTGAAAAGGAGGCTCTGGCATGTGTTTGGGCAGTGGAAAGGTGGAGGACATACTTGTGGGGCCGCAGATTTACTCTGCGGACTGACCATCAAGCCTTAACGACGCTGCTGACCACAAAAGGGACTGATAGAGCTGGTATGCGCATAGCCCGCTGGGCTGCTCGGTTGCTCTGTTTCAACTACGCAGTTGAGTACCGTGCTGGATCTGAAAACCACACTGCAGATTGTCTGTCCCGCTTGCCCCTGCCTCTTGCTTCGGATGCTGAGTCGGATACCGAGCCCGAGTTTGTTGCTTTACTGTCCACTGGTCCAACTGCCATATCCCAGGATGAGTTTGCTGCTGCCTCGGCTCGCTGTTCTGAACTCTCTGCACTGCGCACACAAATTGCGAGTGGATGGCCTCCATCTTCTGCTGCTCTGGATCCTGTTCTTCGCCCGTACTACAAACTCAGACATGAGCTCAGTGTGCAAGCTGATTTTGTGTTTAGAGGGTCTCGATTGGTGGTACCTGGGGAACTGCGTGAGCCATTGATCCGCATTGCACATGAGGGCCATCAGGGGATTGTGAGAACAAAACAACGCCTGCGCGAAATGTATTGGTGGCCCAAAATGGACATACTTGTGGCAGAGAAAATTACTGCCTGTCCGTTATGCCTTTCTCTGGATAAAACTGCGAAAGCCTCTGCTGTTCCACTCCAGCCTGTTCCTTTACCTTCTGCGCCTTGGGAAAAACTGGCAATAGCCATCGTGGGCCCTTTCGAGACTGCTGTCTGGGATTGTCGATATATGTGCATGCATGTTATCCTGCTTGTTCAAATTAGTTATTAAAGTTTCCTAAGAGGAATACAAAGTTTTGTGCTTCTTGTCTACATGAAGACATAACACACATAGAGGTACTTCAGGTAATGGCACACTTTGAGTGTATTTCCACTGATCTAGACCCATTATTTGGGACTAAGTTGGGTGTATATCCCTATCCTTTTAATGATATACTCAATCATTTGTTGCCTTCTCACTTCTAGTGGTATTTCACCCTTTTCAACTTGTACAGCATTCACAGGAGAACTACTAAAAGCCCCACAACACATTCTCAGAGCCTGCATCTGCATCACATCTATTTTCTTTAGTTGTGTATCACTTGCTGTTCCATCTTTCAAGCGTAAGGATTTGAGCGAGTTTGACAAGGGCCAAATTGTGATGGCTAGACGACTTGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGGTGTTCCCGGTCTGCAGTGGTCAGTATCTATCAAAAGTGCTCCAAGGAAGGAACAGTGGTGAACCGGCGACAGAGTCATGGGCGGCCGAGACTCACTGATGCACGTGGGGAGCGAAGGCTGGCCCGTGTGGTCAGATCCAACAGACGAGCTACTGTAGCTCAAATTGCTCAAGAAGTTAATGCTGGTTCTGATAGAAAGATGTCAGAATACACAGTGCATCACAGTTTGTTGCGTATGGGGCTGCATAGACGCAGACCAGTCAGGGTGCTGACCCCTGTCCACCGCCGAAAGCACCAACAATGGGCACGTAAAGGTGTAAAAAAAATCAAATCAAGTAAGGTCCCAATAAGACAGCATCCATTTATTATTTTAATAAATATAATCATACAGGATACACTGAATGTTTTTATCGCATACAGTTTTAAAATGTACTACAATACACTGGAGCAAATAGCATTAGTGTGAATGGAAATAGCATGTAAGTGTAGGACCTACACCTAACCCTAATTATATTGAACCTGCTGATCAGTAAAGCTGTCCTTGAAGGTCCAGGAAGTGAGCCATGATTATATATATGGACTATACTTTGAAAGGCTATGTGCCTGGTATATGCATATGCTATTCACATCAGAAATGAAGTATACTTTGGGCTTAACATTATGAGCTGCACATGTCACGGTTGGTGTGCCATCCCGTCCGATCACTGCGAGGACGCCACCTCAAATTTTAATTATAGGCCTATTAAATACCCGTTAGTCACTTTATATCCACTTTTGGAATATTTTATTAATTTATATTTTAAATAGCTCTCAGCTGATAAGCCACACCACTGTCCATGTTACCATACTAATTACAGGTAAGTAATTTTGTCTTGCTCAACCAGTCAATGGTGGACAGAGCAATAGTGTAAATAACCTTTGCCAACAAAACTTGCAATTTGCAAATTTCTTTTACAGTAAATACTCTGCAAGCTACATAATGATAACATAAACTGATTTACTAAGAACTAAGTACTTTCAAAACAACGTTATGACTAGCTGAAATATAGCTGCAGATGCATGATGTCCAATTTAGTGAACACACGGTTAATCAAAACTGACTCTATATATGAAATTAATATATACTTGTATGGCTCTGTATATGAAATAGCCTACTTTAAAAATAAA

Function

NR:

description
Transposon Ty3-G Gag-Pol polyprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_09253701_09256358.mRNA True 5418 mRNA 0.39 3 9252115 9257790

Neighbor

gene id symbol gene type direction distance location
CI01000030_09225959_09236989 NA coding downstream 12833 9225332 ~ 9239282 (-)
CI01000030_09176691_09178066 NA coding downstream 74049 9176645 ~ 9178066 (-)
CI01000030_09038299_09059689 NA coding downstream 192095 9038248 ~ 9060020 (-)
CI01000030_08934545_08939716 NA coding downstream 312396 8934141 ~ 8939719 (-)
CI01000030_08919811_08923927 NA coding downstream 328188 8919555 ~ 8923927 (-)
CI01000030_09277337_09294501 NA coding upstream 18641 9276431 ~ 9294802 (-)
CI01000030_09382055_09418356 NA coding upstream 124194 9381984 ~ 9419047 (-)
CI01000030_09433282_09440636 NA coding upstream 175126 9432916 ~ 9441088 (-)
CI01000030_09448873_09453673 NA coding upstream 190982 9448772 ~ 9454092 (-)
CI01000030_09500443_09502785 NA coding upstream 242473 9500263 ~ 9502862 (-)
G163693 NA non-coding downstream 33371 9217690 ~ 9218744 (-)
G163988 NA non-coding downstream 54926 9195924 ~ 9197189 (-)
G163650 NA non-coding downstream 75864 9175314 ~ 9176251 (-)
G163971 NA non-coding downstream 83935 9165934 ~ 9168180 (-)
G164000 NA non-coding upstream 4063 9261853 ~ 9270207 (-)
G164005 NA non-coding upstream 25087 9282877 ~ 9283122 (-)
G164006 NA non-coding upstream 25498 9283288 ~ 9283618 (-)
G164007 NA non-coding upstream 26531 9284321 ~ 9284521 (-)
G164008 NA non-coding upstream 27082 9284872 ~ 9285082 (-)
G163873 NA other downstream 318133 8933413 ~ 8933982 (-)
CI01000030_08185866_08194632 NA other downstream 1059629 8184897 ~ 8197266 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 1459733 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 1514111 7735436 ~ 7737720 (-)
G163139 NA other downstream 2101971 7149474 ~ 7150144 (-)
G164071 NA other upstream 217398 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 857725 10102944 ~ 10133765 (-)

Expression


Co-expression Network