CI01000030_08934545_08939716


Basic Information

Item Value
gene id CI01000030_08934545_08939716
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8934141 ~ 8939719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_08934545_08939716.mRNA
ACAATGGATTCAGAGAACAAAGGTTCCCTGAATGTCAAGATTATGGAGCGGAATACACAAGCCTTTCTCATCTCCGGCCGGACGGGGTGGGACAACAAATCAGGCCGCAGTCCTCCGCGGCCGCTGACACATTCTGACACTGATAGATCCGCGCGGAGGGCCGCTCTTAATTACCTTTTAGCCCAGCGCTGGAGAGAGAGAGAGAGCGGTTTAGAGGCGGCCATCGGCCGAACGGCAGCGACAGAGATGAATGCGCAAGACTTCCCACGATCAATCAGCCACTCCGGCCTCCTCTGGATCATCTGTCACGTCCCTATGGAAAAGACAGAAAGAGAAAGCTCTCATTCTCACCCGTCTCACAAAGAAAAGACACGGAAAGAGAATGACAAGAGATAATAAAGTGAAAGACAGTTTGGAGGTGTTTAAGAGGAGATGACTGTGAAAAGCTCAAGGTGGTGTGCGCACACAGGCTGATACAGTTAGCATGCACTTATCAATCGCTTCTGTTGTTCTTTAATTGCAACTGAAGGTTGCAAATTGGCCCGTGGATCATTTTCACCAGCGTCAGGATGCATGAAGACATTGATCACACACACAAACACGTTTACTTAGCTATTTAAAATGAGGACAAACTATAAAAATCTTTAGTTTAAAGCCAAGTATAAGGCTACGAACTAACCCAAAGCCCACTGAATAAA
>TU186164
AAAGAGCAACAAAGCTTCCTTGAGGCAAGAGAAGTTGGTCTCTTTAAAACAAATCAGCACGAAGCAGGGCCGTGACATCAGCACCGCCTGAATAAATGATGATGTAAAATATCGCCTGTGCTGTTGAGGGTGGGACAACAAATCAGGCCGCAGTCCTCCGCGGCCGCTGACACATTCTGACACTGATAGATCCGCGCGGAGGGCCGCTCTTAATTACCTTTTAGCCCAGCGCTGGAGAGAGAGAGAGAGCGGTTTAGAGGCGGCCATCGGCCGAACGGCAGCGACAGAGATGAATGCGCAAGACTTCCCACGATCAATCAGCCACTCCGGCCTCCTCTGGATCATCTGTCACGTCCCTATGGAAAAGACAGAAAGAGAAAGCTCTCATTCTCACCCGTCTCACAAAGAAAAGACACGGAAAGAGAATGACAAGAGATAATAAAGTGAAAGACAGTTTGGAGGTGTTTAAGAGGAGATGACTGTGAAAAGCTCAAGGTGGTGTGCGCACACAGGCTGATACAGTTAGCATGCACTTATCAATCGCTTCTGTTGTTCTTTAATTGCAACTGAAGGTTGCAAATTGGCCCGTGGATCATTTTCACCAGCGTCAGGATGCATGAAGACATTGATCACACACACAAACACGTTTACTTAGCTATTTAAAATGAGGACAAACTATAAAAATCTTTAGTTTAAAGCCAAGTATAAGGCTACGAACTAACCCAAAGCCCACTGAATAAATAAAATGGATGGATGTGTGGATTCATGGATGGATGGATGGATGGATGGATGAATAGATGAGTGGATGGATGGATGGATGGATGGGTGGATGGATGGATGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_08934545_08939716.mRNA False 698 mRNA 0.47 2 8934243 8939719
TU186164 True 843 lncRNA 0.46 1 8934141 8934983

Neighbor

gene id symbol gene type direction distance location
CI01000030_08919811_08923927 NA coding downstream 10316 8919555 ~ 8923927 (-)
CI01000030_08880986_08884756 TMPRSS12, CELA1 coding downstream 49472 8880953 ~ 8884771 (-)
CI01000030_08825422_08836502 NA coding downstream 97116 8825241 ~ 8837127 (-)
CI01000030_08804429_08811448 NA coding downstream 121673 8804270 ~ 8812570 (-)
CI01000030_08742145_08754205 NA coding downstream 178642 8742040 ~ 8755601 (-)
CI01000030_09038299_09059689 NA coding upstream 98529 9038248 ~ 9060020 (-)
CI01000030_09176691_09178066 NA coding upstream 236926 9176645 ~ 9178066 (-)
CI01000030_09225959_09236989 NA coding upstream 285613 9225332 ~ 9239282 (-)
CI01000030_09253701_09256358 NA coding upstream 312396 9252115 ~ 9257790 (-)
CI01000030_09277337_09294501 NA coding upstream 336712 9276431 ~ 9294802 (-)
G163872 NA non-coding downstream 896 8932505 ~ 8933347 (-)
G163632 NA non-coding downstream 59138 8874451 ~ 8875105 (-)
G163610 NA non-coding downstream 133677 8800207 ~ 8800566 (-)
G163598 NA non-coding downstream 147307 8786674 ~ 8786936 (-)
G163605 NA non-coding downstream 151311 8782692 ~ 8782932 (-)
G163970 NA non-coding upstream 209925 9149644 ~ 9150346 (-)
G163971 NA non-coding upstream 226215 9165934 ~ 9168180 (-)
G163650 NA non-coding upstream 235595 9175314 ~ 9176251 (-)
G163988 NA non-coding upstream 256205 9195924 ~ 9197189 (-)
G163693 NA non-coding upstream 277971 9217690 ~ 9218744 (-)
G163873 NA other downstream 261 8933413 ~ 8933982 (-)
CI01000030_08185866_08194632 NA other downstream 741757 8184897 ~ 8197266 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 1141861 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 1196239 7735436 ~ 7737720 (-)
G163139 NA other downstream 1784099 7149474 ~ 7150144 (-)
G164071 NA other upstream 535469 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 1175796 10102944 ~ 10133765 (-)
G163875 NA non-coding upstream 158 8935141 ~ 8935887 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020851 NA non-coding NC_007133.7 CM002906.2 7422884 ~ 7423468 (-)