G163872


Basic Information

Item Value
gene id G163872
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8932505 ~ 8933347 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU186159
ATGGATGGATGGATGGATGGATGATGGATGGATGGATGGATGGATGGGTGGACGACTAGATGGATGGATGGATGGATGGATGGATGGATGGGTGGATGGATGGGTGGATGGGTGGATCGATGGATAGGTGGACGGCTGGATGGATGGACAGATAAATGGATGGATGGTTGGATGGAAGGATGGACGGACGGAGGGATGGATTGATGGATGGATGGACGGACGGATGGAGGGAGGGATGGATCGATGGATGGGTGGATGCGTGGATCCATGGATGGGTGGATGGATGGACGGATGGATGGGTGGATACGTGGATGGATGGACAGATGGATGGATGGATGGATGGACAGACAAACAGAGAGAGATGATTGGTTTTGTCGCCTGAGCAGTTTCAGGGTCACTGACTGCTGCCTCCACCTTGCTCTCGGTCTCGCATTGGCTGCTGTCAACATGGTCACATGACCCTGACCTGTGACATCACTCAAGACCACCTGCACACAGAAGAACGCAGAAGTCAATACACTTGCACACCCGAAATTCAGACAGCGCCAATCAATCAAAACATCATCCGGCACTCCGCTCAGATCATTTATGGAAATGCAGAGCTGCCAAGCTCACATTCTGACTCCACACATCCAAAGTGTCAATACATGTTCGTCTGATGGGTTGCCTCCAATCTGTGTGATTTTCTGTCTCTGCAAATTGGATGCAAGTTGAAATCTTGAATATTTGTATGTATAACTAGATTTTTGTTTACAAACAGCATTGTAAGTAGTTGCTAGGGCATCGCTAAACAGTTGTTAAGGAGTTCTGAGTGTTTTTATAGTGTTGCTAAGCAGTTGCTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU186159 True 843 lncRNA 0.48 1 8932505 8933347

Neighbor

gene id symbol gene type direction distance location
CI01000030_08919811_08923927 NA coding downstream 8578 8919555 ~ 8923927 (-)
CI01000030_08880986_08884756 TMPRSS12, CELA1 coding downstream 47734 8880953 ~ 8884771 (-)
CI01000030_08825422_08836502 NA coding downstream 95378 8825241 ~ 8837127 (-)
CI01000030_08804429_08811448 NA coding downstream 119935 8804270 ~ 8812570 (-)
CI01000030_08742145_08754205 NA coding downstream 176904 8742040 ~ 8755601 (-)
CI01000030_08934545_08939716 NA coding upstream 896 8934141 ~ 8939719 (-)
CI01000030_09038299_09059689 NA coding upstream 104901 9038248 ~ 9060020 (-)
CI01000030_09176691_09178066 NA coding upstream 243298 9176645 ~ 9178066 (-)
CI01000030_09225959_09236989 NA coding upstream 291985 9225332 ~ 9239282 (-)
CI01000030_09253701_09256358 NA coding upstream 318768 9252115 ~ 9257790 (-)
G163632 NA non-coding downstream 57400 8874451 ~ 8875105 (-)
G163610 NA non-coding downstream 131939 8800207 ~ 8800566 (-)
G163598 NA non-coding downstream 145569 8786674 ~ 8786936 (-)
G163605 NA non-coding downstream 149573 8782692 ~ 8782932 (-)
G163603 NA non-coding downstream 150482 8781738 ~ 8782023 (-)
G163875 NA non-coding upstream 1794 8935141 ~ 8935887 (-)
G163970 NA non-coding upstream 216297 9149644 ~ 9150346 (-)
G163971 NA non-coding upstream 232587 9165934 ~ 9168180 (-)
G163650 NA non-coding upstream 241967 9175314 ~ 9176251 (-)
CI01000030_08185866_08194632 NA other downstream 740019 8184897 ~ 8197266 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 1140123 7788797 ~ 7792198 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other downstream 1194501 7735436 ~ 7737720 (-)
G163139 NA other downstream 1782361 7149474 ~ 7150144 (-)
G163065 NA other downstream 2006848 6924483 ~ 6925657 (-)
G163873 NA other upstream 66 8933413 ~ 8933982 (-)
CI01000030_09277337_09294501 NA other upstream 353859 9276431 ~ 9294802 (-)
G164071 NA other upstream 541841 9475188 ~ 9476264 (-)
CI01000030_10103451_10131419 NA other upstream 1182168 10102944 ~ 10133765 (-)

Expression


Co-expression Network