Gene
RNA
| Item | Value |
|---|---|
| gene id | G164008 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 9284872 ~ 9285082 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU186315 | True | 211 | lncRNA | 0.44 | 1 | 9284872 | 9285082 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_09253701_09256358 | NA | coding | downstream | 27082 | 9252115 ~ 9257790 (-) |
| CI01000030_09225959_09236989 | NA | coding | downstream | 45590 | 9225332 ~ 9239282 (-) |
| CI01000030_09176691_09178066 | NA | coding | downstream | 106806 | 9176645 ~ 9178066 (-) |
| CI01000030_09038299_09059689 | NA | coding | downstream | 224852 | 9038248 ~ 9060020 (-) |
| CI01000030_08934545_08939716 | NA | coding | downstream | 345153 | 8934141 ~ 8939719 (-) |
| CI01000030_09382055_09418356 | NA | coding | upstream | 96902 | 9381984 ~ 9419047 (-) |
| CI01000030_09433282_09440636 | NA | coding | upstream | 147834 | 9432916 ~ 9441088 (-) |
| CI01000030_09448873_09453673 | NA | coding | upstream | 163690 | 9448772 ~ 9454092 (-) |
| CI01000030_09500443_09502785 | NA | coding | upstream | 215181 | 9500263 ~ 9502862 (-) |
| CI01000030_09561245_09573575 | NA | coding | upstream | 276080 | 9561162 ~ 9574107 (-) |
| G164007 | NA | non-coding | downstream | 351 | 9284321 ~ 9284521 (-) |
| G164006 | NA | non-coding | downstream | 1254 | 9283288 ~ 9283618 (-) |
| G164005 | NA | non-coding | downstream | 1750 | 9282877 ~ 9283122 (-) |
| G164000 | NA | non-coding | downstream | 14665 | 9261853 ~ 9270207 (-) |
| G164014 | NA | non-coding | upstream | 22737 | 9307819 ~ 9308194 (-) |
| G163786 | NA | non-coding | upstream | 40393 | 9325475 ~ 9325969 (-) |
| G164018 | NA | non-coding | upstream | 41614 | 9326696 ~ 9327062 (-) |
| G164020 | NA | non-coding | upstream | 43472 | 9328554 ~ 9328880 (-) |
| G163765 | NA | non-coding | upstream | 48272 | 9333354 ~ 9333908 (-) |
| G163873 | NA | other | downstream | 350890 | 8933413 ~ 8933982 (-) |
| CI01000030_08185866_08194632 | NA | other | downstream | 1092386 | 8184897 ~ 8197266 (-) |
| CI01000030_07788973_07791700 | TUSC2B, TUSC2 | other | downstream | 1492490 | 7788797 ~ 7792198 (-) |
| CI01000030_07736031_07737720 | LSM7.L, GM13182, LSM7 | other | downstream | 1546868 | 7735436 ~ 7737720 (-) |
| G163139 | NA | other | downstream | 2134728 | 7149474 ~ 7150144 (-) |
| CI01000030_09277337_09294501 | NA | other | upstream | 2124 | 9276431 ~ 9294802 (-) |
| G164071 | NA | other | upstream | 190106 | 9475188 ~ 9476264 (-) |
| CI01000030_10103451_10131419 | NA | other | upstream | 830433 | 10102944 ~ 10133765 (-) |
