RNA id: CI01000030_09253701_09256358.mRNA



Basic Information


Item Value
RNA id CI01000030_09253701_09256358.mRNA
length 5418
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000030_09253701_09256358
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9252115 ~ 9257790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAAAGAATGCTGAGCATGTGCATGCATGTTATCCTGCTTGTTCAAATTAGTTATTAAAGTTTCCTAAGAGGAATACAACGTTTGTCTTGTCTACATGAAGACATAACAAAATTGGCGACGAGGAAGTTTTTACAAGATATCCTGAAGTAGGCATCAGTAAGTGCTCCATTTCCCAGTCCTCTTTTGCCTTGTCCCGGTGAGCCTGCTATACCACTAGTAACATGGCTGAAGATGTTTCAGAACTACATGCTTGTCATCAATGCTACTGGGGATTCCTGGCCAGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTGCTATACCACTAGTAACATGGCTGAAGATGTTTCAGAACTACATGCTTGTCATCAATGCTACTGGGGATTCCTGGCCAGAAGCCAGAAAACGGGCTTTGCTTCTTCGCTGCCTCAGAACTGAAGGTCAGAGACTGTTTTATACATTGCCCAATACCGGTGCCGATCTGGCAGATGCTATTAAAGCTTTAGAAGAGCACTTCATTCTAAAAAGAAATGTGGTCGTGGAAAGACACGCCTTCAGGAAACGAGTGCAGAGGACAGATGAAACGGTAGTGCAATACATTGCTGCATTGAGAGATTTGGCGACTACTTGTGAATTTGCTGACAATCTTGACGATATGCTGTGTGACCAGCTTGTAGAAAACATTGCTAACCCTCGCATTCGTGAAAGATTATTAGTGGAATCTAAATGGAGACTGCAATTACAATTGCCACACAGCTAGAGGCCGCTGATGCCCAGGCAAAATCAATGGCTACAAGCAACCCTGCTCCAGTACAAGCCGTACATGCCACTCCTGCTTCTGGACGACAGCGTCCTAAGGCCAAATTCAAAGCACATACCTCATCAAAACCCTCTGCTTCTGCTCCGTCAGCTCAGACATGCTTCCGCTGTGGCTCTGCTAGTCATCTTGCAAACGCACAGAACTGCCCTGCTGCATCTGCTAAATTGCATTCAGTTGAATTACCAGAGGTCTGTATTCTCTATCTACCTGGAGCAACTGACCGTTTGATGTGTGATGTGACCATAAATGCTACACCTGCTGCCACCCCTGTGTCTCTTCAACTCACAGTGGACTCTGGTTCATCAGTGTCCATCCTGCCAAAACAATTGTATGAGCAGCATTTTCACACTGTACCATTACAATCTCCTATTGCCCGTTTAGTTACTTACTTACAAGAGCCAATTTCAGTACTAGGATGTTTACCTGCAACGGTATCCAAATATGGCATTACCTGTCCTGCACACTTCTTCATAGTTGACAATGGCACAGCTTTGCTAGGCATGGACCTGATTAAGGGACTCCAGCTTCGATTTGATGGACACACTGTTCTGCCGCCGCCACAATCCACTTCAGTCTGTGCCCTCTCCACTCCTCCATCACAGCGTGCTGCATTGGGCTGTGTAAAAAATTTTACACACAAGGTTAACATTTCTGACTCTGTACCTCCTGTCAGACACAAATTGCGTTGCTTACCTTTCTCTGTGAGAGATGCTGTTTCCGCAGAACTGGAACGACTCTTGCATGCAGGTGTAATTGAAAGGATTGACTCCTCTCCATGGGTTTCCCCAATTGTTGTGGTCCAAAAGAAAACTGGGGGGATCCGCATGTGTGTGGATCTGGTACCTTATGGCTTGGCATCTGCTCCATCTGCATTCCAAAAGATGATGGTTGTCATTCTAAAAGGACTCCAGAATGTTACAAATTATCTGGATGACATCATCGTGTGGGGACGCTCGCTACAAGAGCATGATCAAGCATTAGAGAATGTGCTGCAACGTCTCAAAGATGCTGGGTTGGTGCTGAATGAGTCTAAATGTCAATTCAGAAAGCAGAGCTTGAAGTTTTTAGGACACATGATGACGTCACAGGGTATTCAGCTAGATCAGGAACACCTCTCTGCAATAATCGATGCACCTGCACCATCGGATGCTGTTCAGTTGCGTTCTCTGCTGGGCCTCCTCTCATGGTACAACAAATTTATTTCCAATTTCGCAATGCCTCTGCGTGCATGCCTGAGAGATGAGAGTGGATTTCGTTGGTCTGATGAAGCCCAACAAAGCTTGGCTGAGGTAAAAAAGCTACTGGTACACAGTCCTGCTCTTGCACTGTTTGACCTGGGTCTGCCAGTGGTAATTTCTACTGATGCGTCTGCTTACGGACTAGGTGCCGTCTTCGCACAAATATGCACTGATGGTCAAGAATGTACTGTTGCTTTCGCATCCAGAACACTCACTCCAGCTGAACAGAAATACTCCACTGTTGAAAAGGAGGCTCTGGCATGTGTTTGGGCAGTGGAAAGGTGGAGGACATACTTGTGGGGCCGCAGATTTACTCTGCGGACTGACCATCAAGCCTTAACGACGCTGCTGACCACAAAAGGGACTGATAGAGCTGGTATGCGCATAGCCCGCTGGGCTGCTCGGTTGCTCTGTTTCAACTACGCAGTTGAGTACCGTGCTGGATCTGAAAACCACACTGCAGATTGTCTGTCCCGCTTGCCCCTGCCTCTTGCTTCGGATGCTGAGTCGGATACCGAGCCCGAGTTTGTTGCTTTACTGTCCACTGGTCCAACTGCCATATCCCAGGATGAGTTTGCTGCTGCCTCGGCTCGCTGTTCTGAACTCTCTGCACTGCGCACACAAATTGCGAGTGGATGGCCTCCATCTTCTGCTGCTCTGGATCCTGTTCTTCGCCCGTACTACAAACTCAGACATGAGCTCAGTGTGCAAGCTGATTTTGTGTTTAGAGGGTCTCGATTGGTGGTACCTGGGGAACTGCGTGAGCCATTGATCCGCATTGCACATGAGGGCCATCAGGGGATTGTGAGAACAAAACAACGCCTGCGCGAAATGTATTGGTGGCCCAAAATGGACATACTTGTGGCAGAGAAAATTACTGCCTGTCCGTTATGCCTTTCTCTGGATAAAACTGCGAAAGCCTCTGCTGTTCCACTCCAGCCTGTTCCTTTACCTTCTGCGCCTTGGGAAAAACTGGCAATAGCCATCGTGGGCCCTTTCGAGACTGCTGTCTGGGATTGTCGATATATGTGCATGCATGTTATCCTGCTTGTTCAAATTAGTTATTAAAGTTTCCTAAGAGGAATACAAAGTTTTGTGCTTCTTGTCTACATGAAGACATAACACACATAGAGGTACTTCAGGTAATGGCACACTTTGAGTGTATTTCCACTGATCTAGACCCATTATTTGGGACTAAGTTGGGTGTATATCCCTATCCTTTTAATGATATACTCAATCATTTGTTGCCTTCTCACTTCTAGTGGTATTTCACCCTTTTCAACTTGTACAGCATTCACAGGAGAACTACTAAAAGCCCCACAACACATTCTCAGAGCCTGCATCTGCATCACATCTATTTTCTTTAGTTGTGTATCACTTGCTGTTCCATCTTTCAAGCGTAAGGATTTGAGCGAGTTTGACAAGGGCCAAATTGTGATGGCTAGACGACTTGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGGTGTTCCCGGTCTGCAGTGGTCAGTATCTATCAAAAGTGCTCCAAGGAAGGAACAGTGGTGAACCGGCGACAGAGTCATGGGCGGCCGAGACTCACTGATGCACGTGGGGAGCGAAGGCTGGCCCGTGTGGTCAGATCCAACAGACGAGCTACTGTAGCTCAAATTGCTCAAGAAGTTAATGCTGGTTCTGATAGAAAGATGTCAGAATACACAGTGCATCACAGTTTGTTGCGTATGGGGCTGCATAGACGCAGACCAGTCAGGGTGCTGACCCCTGTCCACCGCCGAAAGCACCAACAATGGGCACGTAAAGGTGTAAAAAAAATCAAATCAAGTAAGGTCCCAATAAGACAGCATCCATTTATTATTTTAATAAATATAATCATACAGGATACACTGAATGTTTTTATCGCATACAGTTTTAAAATGTACTACAATACACTGGAGCAAATAGCATTAGTGTGAATGGAAATAGCATGTAAGTGTAGGACCTACACCTAACCCTAATTATATTGAACCTGCTGATCAGTAAAGCTGTCCTTGAAGGTCCAGGAAGTGAGCCATGATTATATATATGGACTATACTTTGAAAGGCTATGTGCCTGGTATATGCATATGCTATTCACATCAGAAATGAAGTATACTTTGGGCTTAACATTATGAGCTGCACATGTCACGGTTGGTGTGCCATCCCGTCCGATCACTGCGAGGACGCCACCTCAAATTTTAATTATAGGCCTATTAAATACCCGTTAGTCACTTTATATCCACTTTTGGAATATTTTATTAATTTATATTTTAAATAGCTCTCAGCTGATAAGCCACACCACTGTCCATGTTACCATACTAATTACAGGTAAGTAATTTTGTCTTGCTCAACCAGTCAATGGTGGACAGAGCAATAGTGTAAATAACCTTTGCCAACAAAACTTGCAATTTGCAAATTTCTTTTACAGTAAATACTCTGCAAGCTACATAATGATAACATAAACTGATTTACTAAGAACTAAGTACTTTCAAAACAACGTTATGACTAGCTGAAATATAGCTGCAGATGCATGATGTCCAATTTAGTGAACACACGGTTAATCAAAACTGACTCTATATATGAAATTAATATATACTTGTATGGCTCTGTATATGAAATAGCCTACTTTAAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186136 lncRNA downstream 16610 9232605 ~ 9234910 (-) True G163851
TU185978 lncRNA downstream 33371 9217690 ~ 9218744 (-) True G163693
TU186287 lncRNA downstream 54926 9195924 ~ 9197189 (-) True G163988
TU185929 lncRNA downstream 75864 9175314 ~ 9176251 (-) True G163650
TU186269 lncRNA downstream 83935 9165934 ~ 9168180 (-) True G163971
TU186303 lncRNA upstream 4063 9261853 ~ 9270207 (-) True G164000
TU186312 lncRNA upstream 25087 9282877 ~ 9283122 (-) True G164005
TU186313 lncRNA upstream 25498 9283288 ~ 9283618 (-) True G164006
TU186314 lncRNA upstream 26531 9284321 ~ 9284521 (-) True G164007
TU186315 lncRNA upstream 27082 9284872 ~ 9285082 (-) True G164008
CI01000030_09225959_09236989.mRNA mRNA downstream 12833 9225332 ~ 9239282 (-) False CI01000030_09225959_09236989
CI01000030_09176691_09178066.mRNA mRNA downstream 74049 9176645 ~ 9178066 (-) True CI01000030_09176691_09178066
CI01000030_09038299_09059689.mRNA mRNA downstream 192095 9038248 ~ 9060020 (-) True CI01000030_09038299_09059689
CI01000030_08934545_08939716.mRNA mRNA downstream 312396 8934243 ~ 8939719 (-) False CI01000030_08934545_08939716
CI01000030_08919811_08923927.mRNA mRNA downstream 328188 8919555 ~ 8923927 (-) True CI01000030_08919811_08923927
CI01000030_09277337_09294501.mRNA mRNA upstream 18641 9276431 ~ 9294802 (-) False CI01000030_09277337_09294501
CI01000030_09382055_09418356.mRNA mRNA upstream 124194 9381984 ~ 9419047 (-) True CI01000030_09382055_09418356
CI01000030_09433282_09440636.mRNA mRNA upstream 175126 9432916 ~ 9441088 (-) True CI01000030_09433282_09440636
CI01000030_09448873_09453673.mRNA mRNA upstream 190982 9448772 ~ 9454092 (-) True CI01000030_09448873_09453673
CI01000030_09500443_09502785.mRNA mRNA upstream 242473 9500263 ~ 9502862 (-) True CI01000030_09500443_09502785
TU186160 other downstream 318133 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1059629 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1459733 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1514111 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 2101971 7149474 ~ 7150144 (-) True G163139
TU185995 other upstream 29416 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 217398 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 857725 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1027939 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 1089570 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087

Expression Profile