RNA id: CI01000030_09500443_09502785.mRNA



Basic Information


Item Value
RNA id CI01000030_09500443_09502785.mRNA
length 1703
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01000030_09500443_09502785
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9500263 ~ 9502862 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTTCCGTTTGTGTGGATATGTCTCAGTTCAGTCTGTGTGTATGTGTGAATGCCTTCAGTCTTTGCAGGAACGAACGATGAAGAAAAACAAGCTGAGTCCTCAGATGACGCAATTATTCCGTAGTGCAATCCAGCGTGGCTCTCCCTCACTGCGGGACTCCAACACGATTACCGAACGTCGAGATAGTCCGATCTCCTCAAGCTTGCTATGCAATAACACTCCATCTAAAGCCCCAGCTAAGAAACAGAAGGGTGACGAAAACCCTGAGATTTCCAATGCTGTTCTTCTGGAAACCATAGTTGCCAGATTTGATCTACAAGACGGAAAGCTGAGCAGCATTGAGCATAAGATCACTGAGAACAGTCTAATGATTGTCAGCCTGACAAAAGCTGTGGAATTCAACACGGCGGAAATAAAGGACTGCAAAACTAAAATAAACTTGTTCGAAAAACAACTCGCCTCAGTTGTCACATCGCACGCAGACTTGATAAGCCGCACGTCGGAGCTTGAACGCTACAAAAGACGATGGAACCTCAGAGTAATCGGAATGAAAGAAACCGCAGGTGAAGATATACAGAGAGAAGTCGTCTCCCTGTTAGCCGAAATTGCTCCTCACCTGCAGCACAAACTTGAAGACATTGTGGATACAGTCCACCGCGTTGGCCCCAAAACGAAGGATAAATCCAGGCAGGTGATCATTCAGTTCTGCATGCGGAAACACAGAGACGAGTTCTGGCGTTCCACCAAAGTCTCGGTTGTCTGTAAACTCAGGGGAATAAAGTTTACCAAAGATTTATCCAAGGAAGATCGAGAAGCCCGCGCTGCACTATGGCCGAGGATCAGTGAGGCTAGAGCCGCAGGGAAGAAAGCCTACTACCGTGGTCCCTATGACTACATAGAGGGCACCCGGATTGTCAAGTACGGAGTGGCAATACTGTTCAACAACCTGCCAGGCAAAATTATTAAGGTAGAAACAGATCCAAATGGTCATTGGGCTTCAGTTGTTATCAACATTAATGATGTTTTGTTCATTTTATTCAATTTGTATGGTTACAACAGTGTACCCCTAAACAACAAATTATTCACTGACATTTCTGATTCTCTATTTGAACTGAAACTTGTTTATCCAACTGATAATATTATTATAGGAGGAGATTTCAATATGGTTATGGATGAAGCGTTAGATCGCTTTCCACCCAAATTTAATACCTCTCACCCTAATCTTAACCTTCTTAATTTTTGCTTGAATAATAATGCAGTGGATGCTTGGAGAGCTGCGAATCCAAATCTTAAACCATTTTCCTTGTTTAAAACTAATGGGACTTCCAAATGGAGAATTGATTACTGGTTGACCTCATCTAACCTAACCGACTTTATCAAGGACATTTCAATGTCCGCAGCACCTTTAACTGATCACTGTTGCATCTCTATATCATTCTACTCGGGCAAAAGAGAATCACATAACAAGGGTTATTGGAAATTCAATGCTGATTTATTAAAACACAAAAACGTTTGCTCGTAAATTAAATCCATAATTAATGATGTAACATTGCATAAGGACCTAATCTCATTCATAAGTAAATGGGAATATTTAAAACACAAGATTCTGGAATTTTCTATACAATTCAGTCAAAATTTAAGTAAGGCCAGAACTCAATTGGAGTTAGAAACAACAAGAGAATTAAACTATTTATGTAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186394 lncRNA downstream 390 9499417 ~ 9499873 (-) True G164076
TU186392 lncRNA downstream 6660 9493326 ~ 9493603 (-) True G164074
TU186387 lncRNA downstream 13084 9486466 ~ 9487179 (-) True G164072
TU186363 lncRNA downstream 57243 9442585 ~ 9443020 (-) True G164053
TU186352 lncRNA downstream 95804 9404246 ~ 9404459 (-) True G164042
TU186410 lncRNA upstream 14677 9517539 ~ 9539196 (-) True G164084
TU186423 lncRNA upstream 37905 9540767 ~ 9541062 (-) True G164092
TU186425 lncRNA upstream 41859 9544721 ~ 9544941 (-) True G164094
TU186092 lncRNA upstream 44433 9547295 ~ 9727420 (-) True G163807
TU186428 lncRNA upstream 52779 9555641 ~ 9556172 (-) True G164097
CI01000030_09448873_09453673.mRNA mRNA downstream 46171 9448772 ~ 9454092 (-) True CI01000030_09448873_09453673
CI01000030_09433282_09440636.mRNA mRNA downstream 59175 9432916 ~ 9441088 (-) True CI01000030_09433282_09440636
CI01000030_09382055_09418356.mRNA mRNA downstream 81216 9381984 ~ 9419047 (-) True CI01000030_09382055_09418356
CI01000030_09277337_09294501.mRNA mRNA downstream 205461 9276431 ~ 9294802 (-) False CI01000030_09277337_09294501
CI01000030_09253701_09256358.mRNA mRNA downstream 242473 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
CI01000030_09561245_09573575.mRNA mRNA upstream 58300 9561162 ~ 9574107 (-) True CI01000030_09561245_09573575
CI01000030_09579086_09594020.mRNA mRNA upstream 76202 9579064 ~ 9594113 (-) True CI01000030_09579086_09594020
CI01000030_09639163_09647509.mRNA mRNA upstream 135280 9638142 ~ 9647564 (-) True CI01000030_09639163_09647509
CI01000030_09683547_09689191.mRNA mRNA upstream 179437 9682299 ~ 9689387 (-) True CI01000030_09683547_09689191
CI01000030_09698618_09704345.mRNA mRNA upstream 195735 9698597 ~ 9704405 (-) True CI01000030_09698618_09704345
TU186385 other downstream 23999 9475188 ~ 9476264 (-) True G164071
TU185995 other downstream 198114 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 566281 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1307777 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1707881 7792243 ~ 7792382 (-) True G163366
TU186002 other upstream 612653 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 782867 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 844498 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 862555 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186808 other upstream 1991476 11512598 ~ 11512682 (-) True G164443

Expression Profile