RNA id: TU186048


Basic Information

Item Value
RNA id TU186048
length 491
RNA type TUCP
GC content 0.41
exon number 3
gene id CI01000030_10313822_10320039
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10313723 ~ 10320105 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTGTTAGTGCACAATCTGTCTCTCACAGTGAGTGGTCACATATTTCAAGCACTGTTATTTAAAGATGGTTCATCTGTTTATTTTGTGCTACATGTGGCATATGGCTGGTGTGTTTGGTGATTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTTTATACACTGATCTTACTGAAAGAGATGAAGATGACTACATACTGTGGAAATATGGAGCTGAAAACTCTCTCATAGCTGAAATGAATAGAGCTGCTGGAATATTCTCCACATCTGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACGATCAAACTGGATCTCTGACCATCACAAACATCACAACTGAACATGCTGGAGTTTATGAACTAGAGATAATGGGAGTGAAACGATCATCAAAAACATTCAATGTTTCTGTCTACGCTCGTCTGCCTGTTCCTGTCATCAGCAGTAACTCTTCACAATGTTCTTCATCATCATCATCATGTTCATTGTTGTGTTCAGCTGTGAATGTGGGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185997 lncRNA downstream 47996 10237639 ~ 10237733 (-) True G163712
TU186575 lncRNA downstream 60841 10222447 ~ 10224888 (-) True G164232
TU186564 lncRNA downstream 74920 10203655 ~ 10210809 (-) True G164224
TU186024 lncRNA downstream 83255 10200596 ~ 10202474 (-) True G163739
TU186098 lncRNA downstream 99139 10184024 ~ 10186590 (-) True G163813
TU186606 lncRNA upstream 47343 10367448 ~ 10384031 (-) True G164258
TU186032 lncRNA upstream 101753 10421858 ~ 10429257 (-) True G163747
TU185970 lncRNA upstream 103831 10423936 ~ 10426594 (-) True G163685
TU186042 lncRNA upstream 186689 10506794 ~ 10509132 (-) True G163757
TU186636 lncRNA upstream 196343 10516448 ~ 10516680 (-) True G164284
CI01000030_10227153_10232109.mRNA mRNA downstream 53093 10227074 ~ 10232636 (-) True CI01000030_10227153_10232109
CI01000030_10189939_10194778.mRNA mRNA downstream 90791 10189777 ~ 10194938 (-) True CI01000030_10189939_10194778
CI01000030_10172789_10173932.mRNA mRNA downstream 111733 10172737 ~ 10173996 (-) True CI01000030_10172789_10173932
CI01000030_10154139_10158476.mRNA mRNA downstream 126997 10153704 ~ 10158732 (-) True CI01000030_10154139_10158476
CI01000030_10103451_10131419.mRNA mRNA downstream 151964 10102944 ~ 10133765 (-) False CI01000030_10103451_10131419
CI01000030_10321881_10332415.mRNA mRNA upstream 1766 10321871 ~ 10333450 (-) True CI01000030_10321881_10332415
CI01000030_10343879_10366274.mRNA mRNA upstream 23760 10343865 ~ 10366508 (-) False CI01000030_10343879_10366274
CI01000030_10374567_10392087.mRNA mRNA upstream 53043 10373148 ~ 10393967 (-) False CI01000030_10374567_10392087
CI01000030_10398430_10417482.mRNA mRNA upstream 78020 10398125 ~ 10417687 (-) True CI01000030_10398430_10417482
CI01000030_10443696_10457604.mRNA mRNA upstream 123586 10443691 ~ 10457807 (-) True CI01000030_10443696_10457604
TU186002 other downstream 164009 10121592 ~ 10121720 (-) True G163717
TU186385 other downstream 809465 9475188 ~ 9476264 (-) True G164071
TU185995 other downstream 983580 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 1351747 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 2093243 8192404 ~ 8192486 (-) True G163498
TU186031 other upstream 27255 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 45312 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186808 other upstream 1174233 11512598 ~ 11512682 (-) True G164443

Expression Profile