RNA id: TU185995



Basic Information


Item Value
RNA id TU185995
length 207
RNA type TUCP
GC content 0.44
exon number 3
gene id G163710
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9287206 ~ 9302149 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AACGTTCAGCAGTCGACGCTGGTAAAGCAAGCTCTTATGAAGCAGAGCAGGACCGAGTGTTGTGGGAGCTGAACGAGGCCGCTGGAGCGATTGTGCAACACACACCACGAGCAGCAGAACTTTTATTATGCCGCAGTTGCCGGCGCCACTTCCGCTATTCCGGTCATGAGTATGAGGTGTGTTTGGTGATGAAGTGAAGTCAGTGTCAGTGATGGAGGGAGAATCGGTCCTTCTACACTCTGATGTCACTGAAATACATAAAGACGACAACATACTGTGGAAATTTGGAACTGAAAACTCTATCATAGCTAAAATCAATAGAGCGAAACACATTTCCTCCACATATAATGGTCCTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACACCAGAACCACAGACTCTGGACTCTATAAACTAGATATATTTGGAGCTAAACTTTCATCAAAAACATTCAATGTTTCTGTCTATGCTCATCTGTCCACTCCTAACATCACCAGAGATTTTTCACAAAATCTGTCATCATCATCAAATTGTTCACTGCTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTCAACAATTCATACACCAACCAGACGAGACATCTCAACATTAATCAACTCTGTCACACATGTGCAGCCGTTACAGCACTGGCCCCACAGACTGTTTCACAGACTCCTTCAGTTCTTCCAGTCTCTCTGATAGTGCTGATCTCTGTTTTTGGATCTCTGTTGATTGTAGCTGTAGTCGGGATCTTTTGCATCTACAGGAAATGCAGAAAAACAGTTCAGACAAAGGAGGAAGACAGAACTGATCCAGCATTGAGTAAACCAACAACACTAAAAGAGAAATCAAAGACAGAGGCTGTGTATGGAAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186315 lncRNA downstream 2124 9284872 ~ 9285082 (-) True G164008
TU186314 lncRNA downstream 2685 9284321 ~ 9284521 (-) True G164007
TU186313 lncRNA downstream 3588 9283288 ~ 9283618 (-) True G164006
TU186312 lncRNA downstream 4084 9282877 ~ 9283122 (-) True G164005
TU186303 lncRNA downstream 16999 9261853 ~ 9270207 (-) True G164000
TU186324 lncRNA upstream 5670 9307819 ~ 9308194 (-) True G164014
TU186071 lncRNA upstream 23326 9325475 ~ 9325969 (-) True G163786
TU186328 lncRNA upstream 24547 9326696 ~ 9327062 (-) True G164018
TU186330 lncRNA upstream 26405 9328554 ~ 9328880 (-) True G164020
TU186050 lncRNA upstream 31205 9333354 ~ 9333908 (-) True G163765
CI01000030_09253701_09256358.mRNA mRNA downstream 29416 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
CI01000030_09225959_09236989.mRNA mRNA downstream 47924 9225332 ~ 9239282 (-) False CI01000030_09225959_09236989
CI01000030_09176691_09178066.mRNA mRNA downstream 109140 9176645 ~ 9178066 (-) True CI01000030_09176691_09178066
CI01000030_09038299_09059689.mRNA mRNA downstream 227186 9038248 ~ 9060020 (-) True CI01000030_09038299_09059689
CI01000030_08934545_08939716.mRNA mRNA downstream 347487 8934243 ~ 8939719 (-) False CI01000030_08934545_08939716
CI01000030_09382055_09418356.mRNA mRNA upstream 79835 9381984 ~ 9419047 (-) True CI01000030_09382055_09418356
CI01000030_09433282_09440636.mRNA mRNA upstream 130767 9432916 ~ 9441088 (-) True CI01000030_09433282_09440636
CI01000030_09448873_09453673.mRNA mRNA upstream 146623 9448772 ~ 9454092 (-) True CI01000030_09448873_09453673
CI01000030_09500443_09502785.mRNA mRNA upstream 198114 9500263 ~ 9502862 (-) True CI01000030_09500443_09502785
CI01000030_09561245_09573575.mRNA mRNA upstream 259013 9561162 ~ 9574107 (-) True CI01000030_09561245_09573575
TU186160 other downstream 353224 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1094720 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1494824 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1549202 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 2137062 7149474 ~ 7150144 (-) True G163139
TU186385 other upstream 173039 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 813366 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 983580 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 1045211 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 1063268 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274

Expression Profile