RNA id: TU186002



Basic Information


Item Value
RNA id TU186002
length 129
RNA type TUCP
GC content 0.32
exon number 1
gene id G163717
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10121592 ~ 10121720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACACAGACTGAAGCAGTTTTCACCTCAGTACTCTCTACAGGACTTTTAAACAATTCTCCTTTTCTGAACTGTTGAAGAAAATGTTTTGCTCACTTGTTTTTTGCTCTTTGTGCTTTTGGCATGTGGTTGCTCGTCTGCCTGTTCCTGTCATCAGCAGTAACTCTTCACAATGTTTTTCATCATCATCACCATGTTCATTGTTGTGTTCATCTGTGAATGGGCGTCATGTGACTCTCACCTGGTACAAAGGAAACAGTTTTTTGTCCAGCATCCGTGTGTCTGATCTCAGCATCAATCTCTCTCTACCTCTGGAGTTGGAATATCAGGATAAAAACACCTACAGCTGTGTGTCGAGCAATCCAATCAGCAACCAGACAAGACATTTCAACATCACTCAACTCTGTCACACATGTTCAGGAAGCCACGCCCACTGTTGTGATTCTGTGCTTCGATTGGTCATCACTGCGCTGATGGGTGTGGCTGCTGCAACTGCTCTGTTCTTCTGACATCATTAATCAGATCGACAAGAGGTTAACCAGAGAAAACAGAAGAGATAATGTTGAAGTTATACATGTTTATATTTCCAATAAAAAAAGAAAACAGAAAAGATATAGAATTTATCCAGTTAAGCATGTTTTGGAGAGGTTTAAAGTCAACATTTCTGTCCGTTATACCTGTGAATTTTGGAAGATTTTGCATTTGTTTTATCACTGTTTTATCTTTTTTATTTATTTATTTATTTATTTATTTTATTTTTTTTATCACTGTATCTACTCAAGACTTTGGAAAGATTTAGAAATGTATATTAAGAGAAAACTGGTAATTTAATCCATCAAACACTTTAAAAAAATTCATTATCTCAACTTAACTTTTTTAATTTATCTTTTTTCACTGACTCAGTTAAGTTGTATTTAAGTAGAATATTAAGCATGTTCAACTTGATAAATTTATCTATCACTAGAACATAACTTGCTCTGGAGCAGGTTAAGTTTAGAGAATAAATTGCTATTACTGCTTGCATACTCCAAAAGTTACATCAGTTTTTGGAACTGAAAGTTTACCCACATACTCTGAGTAAAAATACCCATGTTGCATAACCTGTTTTCTGAGCGTTTTATCTGGGTATACGTCAGCGAAACAAGCAGGTACAGACACAACTAGTCATAAACCACTTTCAGTTTCAGAAGAACACAATTTTACTTGTGCATTTACATGGACAAAATCTTTTATTTCCACAGATTCAGTGTTCTGTGACTTTTGTAAAATGATGGTCTTTATTTTGCTCTTAGTGTGTGTGTTAGTGGCTGGTAAGTGCATTTATTTGTTACAGTGTCTTTTCTGAATGATAATGAAACCAAAAGTGTAGTTTGGACATGACCCAGTTTGAATTTATTCAGTTTTATTCATTTTTATCTATTGCTATTTTAAATATTTAAGGGTTTAGTATAAATTTGTTATTTGATGAGGTTGCTGTAACAAATTATAGCATGTAAAATTGTGTCCTGGTCATTTATTCTGAATCGCTAATTAACATTTAAGAGGAACAGTCAAAATAGTTTGAATTGTTCTTTTAAATCAGTCTAAAACTTTCAAGAGCTGATAAACCAGATTCTGTAAATAAAAAAAGCATTGATACTGTAGAATTAAAAAGAAATTAATTTAAAAAAAAAAAAACATTAATATGGTGGAAAATAACAATAAAATAATTTTAACCATGGTCTAGATAAAACAAGCAATGATCTCTATTGTGTGGGAAGGGGATTTTTGTATGAGAAGGTGTTTGTGAGTGATGTGTAAGATCATAAATGTGTTAATAAATGATGTTCTTCTGCTGTTTGATTTCATGCATTACAATACATATTGTATTTATCTCATTTCCTGAAGGCAATTTGGTTGCAGCATATAGACATATAAACAATACATAAAAAGCACAACAATGCATAAACCCTTAAGAATCTTTTCTACTTATCCCAACAATGGAAAATTAAATATTCAATTTAAGAGCTCTACAGATGATAAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186082 lncRNA downstream 19888 10094923 ~ 10095627 (-) True G163797
TU186525 lncRNA downstream 88660 10026224 ~ 10026855 (-) True G164188
TU186503 lncRNA downstream 134113 9919610 ~ 9981402 (-) True G164167
TU186057 lncRNA downstream 202862 9912503 ~ 9912653 (-) True CI01000030_09899280_09916736
TU186499 lncRNA downstream 206353 9908672 ~ 9909162 (-) True G164165
TU186098 lncRNA upstream 62304 10184024 ~ 10186590 (-) True G163813
TU186024 lncRNA upstream 78876 10200596 ~ 10202474 (-) True G163739
TU186564 lncRNA upstream 81935 10203655 ~ 10210809 (-) True G164224
TU186575 lncRNA upstream 100727 10222447 ~ 10224888 (-) True G164232
TU186001 lncRNA upstream 163550 10298980 ~ 10299177 (-) True CI01000030_10297963_10300335
CI01000030_10078771_10093451.mRNA mRNA downstream 21796 10078553 ~ 10093719 (-) False CI01000030_10078771_10093451
CI01000030_10071261_10074291.mRNA mRNA downstream 40856 10071118 ~ 10074659 (-) True CI01000030_10071261_10074291
CI01000030_10053291_10057146.mRNA mRNA downstream 58018 10053102 ~ 10057497 (-) True CI01000030_10053291_10057146
CI01000030_10021914_10024391.mRNA mRNA downstream 90274 10020983 ~ 10025241 (-) True CI01000030_10021914_10024391
CI01000030_10016398_10019434.mRNA mRNA downstream 95499 10016209 ~ 10020016 (-) True CI01000030_10016398_10019434
CI01000030_10154139_10158476.mRNA mRNA upstream 31984 10153704 ~ 10158732 (-) True CI01000030_10154139_10158476
CI01000030_10172789_10173932.mRNA mRNA upstream 51017 10172737 ~ 10173996 (-) True CI01000030_10172789_10173932
CI01000030_10189939_10194778.mRNA mRNA upstream 68057 10189777 ~ 10194938 (-) True CI01000030_10189939_10194778
CI01000030_10227153_10232109.mRNA mRNA upstream 105354 10227074 ~ 10232636 (-) True CI01000030_10227153_10232109
CI01000030_10280046_10287211.mRNA mRNA upstream 158258 10279978 ~ 10287250 (-) False CI01000030_10280046_10287211
TU186385 other downstream 639251 9475188 ~ 9476264 (-) True G164071
TU185995 other downstream 813366 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 1181533 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1923029 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 2323133 7792243 ~ 7792382 (-) True G163366
TU186048 other upstream 164009 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 225640 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 243697 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186808 other upstream 1372618 11512598 ~ 11512682 (-) True G164443

Expression Profile