CI01000030_10172789_10173932


Basic Information

Item Value
gene id CI01000030_10172789_10173932
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10172737 ~ 10173996 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_10172789_10173932.mRNA
AACAGAATCCTTAATTTGTTCCTGTTCATGTTCTCCAGGTGTGTTTGGTGATTCAGTGTCAGTGATGGAGGGAGATTCTGTCACTCTAAACTCTGATGTTACTGAAATACATGAAGACGACGACATACTGTGGAAATATGGAGCTGAAAACTCTCTCATAGCTAAAATGAGCATTGAGAACCAAATCTTCTCCACATCTGATGGTCCTGATGGGAGATTCAGAGACAGACTGAAGCTGGACGATCAAACTGGATCTCTGACCATCACAAACACCAGAACTGAACATGCTGGAGTTTATGAACTAGAGATAAAGGGAGTGAAACGATCATCAAAAACATTCAGTGTTTGTGTCTATGCTCGTCTGCCTGTTCCTGTCATCAGCAGTAACTCTTTACAATGTTCTTCATCATCAAATTGTTCATTGTTGTGTTCAGCTGTGAATGTGAGTCATGTGACTCTCTCCTGGTACAAAGGAAACAGTTTATTGTCCAGCATCAGTGTGTCTGATCTCAGCATCAGTCTCTCTCTACCTCTGGAGGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCAACCAGACTCAACATCTGGACATCACTCAACTCTGTCACACATGTGCAGGAGATGTAGAAAAACAGGTCAGGAGAGCAAGCAATTAATCTGTATAAATATCTATCTTTTTGAAGACATAAATTTCTATATAATATTAAA

Function

NR:

description
hypothetical protein cypCar_00037883

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_10172789_10173932.mRNA True 731 mRNA 0.40 3 10172737 10173996

Neighbor

gene id symbol gene type direction distance location
CI01000030_10154139_10158476 NA coding downstream 14005 10153704 ~ 10158732 (-)
CI01000030_10103451_10131419 NA coding downstream 38972 10102944 ~ 10133765 (-)
CI01000030_10078771_10093451 NA coding downstream 79018 10078553 ~ 10093719 (-)
CI01000030_10071261_10074291 NA coding downstream 98078 10071118 ~ 10074659 (-)
CI01000030_10053291_10057146 NA coding downstream 115240 10053102 ~ 10057497 (-)
CI01000030_10189939_10194778 NA coding upstream 15781 10189777 ~ 10194938 (-)
CI01000030_10227153_10232109 NA coding upstream 53078 10227074 ~ 10232636 (-)
CI01000030_10280046_10287211 NA coding upstream 105982 10279978 ~ 10287250 (-)
CI01000030_10297963_10300335 NA coding upstream 123476 10297456 ~ 10300659 (-)
CI01000030_10313822_10320039 NA coding upstream 139727 10313723 ~ 10320105 (-)
G164188 NA non-coding downstream 145882 10026224 ~ 10026855 (-)
G164167 NA non-coding downstream 191335 9919610 ~ 9981402 (-)
G164165 NA non-coding downstream 263575 9908672 ~ 9909162 (-)
G163813 NA non-coding upstream 10028 10184024 ~ 10186590 (-)
G163739 NA non-coding upstream 26600 10200596 ~ 10202474 (-)
G164224 NA non-coding upstream 29659 10203655 ~ 10210809 (-)
G164232 NA non-coding upstream 48451 10222447 ~ 10224888 (-)
G164071 NA other downstream 696473 9475188 ~ 9476264 (-)
CI01000030_09277337_09294501 NA other downstream 870588 9276431 ~ 9294802 (-)
G163873 NA other downstream 1238755 8933413 ~ 8933982 (-)
CI01000030_08185866_08194632 NA other downstream 1980251 8184897 ~ 8197266 (-)
CI01000030_10343879_10366274 NA other upstream 191421 10343865 ~ 10366508 (-)
CI01000030_11494792_11495184 CTXN1 other upstream 1320342 11494183 ~ 11495854 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020130 CT583625.1 coding NC_007133.7 CM002906.2 6757741 ~ 6759019 (+)