G164167


Basic Information

Item Value
gene id G164167
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9919610 ~ 9981402 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU186503
AGGGGTTGGGCTTGGCCCCTTAGTTCCAGTGAAAGGAACTCCTAATGCTTCAGCATACCAAGACATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTGGGGATGGCCCCTTCCTGTTCCTACATGACTGCGCACCAGTGCACAAAGCAAGGTCCATAAAGACATGATGAGTGAGTTTGGTGTGGAGGAACTTGACTGGCCTGCACAGAGTCCTGACCTCAACCCGATAGAACACCTTTGGGATGAATTAGAGCGGAGACTGTGAGCCAGGCCTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU186503 True 285 lncRNA 0.51 2 9919610 9981402

Neighbor

gene id symbol gene type direction distance location
CI01000030_09899280_09916736 NA coding downstream 704 9899085 ~ 9918906 (-)
CI01000030_09889631_09892529 NA coding downstream 26969 9889551 ~ 9892641 (-)
CI01000030_09861443_09865523 NA coding downstream 53684 9860252 ~ 9865926 (-)
CI01000030_09857554_09858116 NA coding downstream 61358 9857318 ~ 9858252 (-)
CI01000030_09828173_09846949 NA coding downstream 72562 9828058 ~ 9847048 (-)
CI01000030_10016398_10019434 NA coding upstream 34807 10016209 ~ 10020016 (-)
CI01000030_10021914_10024391 NA coding upstream 39581 10020983 ~ 10025241 (-)
CI01000030_10053291_10057146 NA coding upstream 71700 10053102 ~ 10057497 (-)
CI01000030_10071261_10074291 NA coding upstream 89716 10071118 ~ 10074659 (-)
CI01000030_10078771_10093451 NA coding upstream 97151 10078553 ~ 10093719 (-)
G164165 NA non-coding downstream 10448 9908672 ~ 9909162 (-)
G163784 NA non-coding downstream 71625 9726605 ~ 9847985 (-)
G163684 NA non-coding downstream 113729 9733712 ~ 9805881 (-)
G164150 NA non-coding downstream 120659 9775838 ~ 9798951 (-)
G164188 NA non-coding upstream 44822 10026224 ~ 10026855 (-)
G163743 NA non-coding upstream 126192 10107594 ~ 10403831 (-)
G163813 NA non-coding upstream 202622 10184024 ~ 10186590 (-)
G163739 NA non-coding upstream 219194 10200596 ~ 10202474 (-)
G164071 NA other downstream 443346 9475188 ~ 9476264 (-)
CI01000030_09277337_09294501 NA other downstream 617461 9276431 ~ 9294802 (-)
G163873 NA other downstream 985628 8933413 ~ 8933982 (-)
CI01000030_08185866_08194632 NA other downstream 1727124 8184897 ~ 8197266 (-)
CI01000030_07788973_07791700 TUSC2B, TUSC2 other downstream 2127228 7788797 ~ 7792198 (-)
CI01000030_10103451_10131419 NA other upstream 134113 10102944 ~ 10133765 (-)
CI01000030_10343879_10366274 NA other upstream 384015 10343865 ~ 10366508 (-)
CI01000030_11494792_11495184 CTXN1 other upstream 1512936 11494183 ~ 11495854 (-)

Expression


Co-expression Network