XLOC_020130 (CT583625.1)


Basic Information

Item Value
gene id XLOC_020130
gene name CT583625.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6757741 ~ 6759019 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040098
CAATAGGTTTTTAGACTGCACATATTATTACACATTTAAAGATGAAATATTTTTCTACACTTATTTGTTAATCGCTTTCTTGCTTTCATGTTTGTGTGTGGAATCTTAATCTGAGACTAAACCGGTTTCTTTTCTCCAGGTGCATTTGCTAAGaatgtgtctgtgtctgtgtcagtGACCGAAGGAGATAATGTTACTCTAATCTCTGGTGTAACTGAAATACATAATGacgacatactgtggaaattcgTACCCGAAAACTTTCTAATAGCTAAAACTAGCATGGATAAGCAAAACTTCTCCACATTTGATGGTCCTGAtgggagattcagagacagactgaagcTGGACCGAcaaactggatctctgaccatcacaaacATCAGATCTGAACATGCTGGAGATTATGAACTAGACATAAGTGAAAAAAAACTGATATCAAAAACATTCAAGGTTTCTGTTTATGCTCGTCTGCCTGTTCCTGTCCTCATCTTCAACTCTTCTCAGTGTTCTTCATCCCAGTATAATTGTTCAGTGttgtgttcagtggtgaatgtgagtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaaTATCAGGATAGCAACACCTACAGCTGTATGATCAACAACACCATCAGCAACCAGACCACACATCTGGACATCAACACACTCTGTAAGAAGTGTGAAGGTAGCAGTGATTATACTGATTTCATAGCTGTTTTTGATGTATACTGACATATTCTCTTCTATCTTAAGCAAACTCACAGTCTCACTCTCAACAAGACGTGCATGTACAAGTTCTGACCTCCGCTGCTGGATGTCTGTTGATTGTGTGTGTAATTGGGATCCTCTGGATTCACAGAAAATGTCGAAAAAACAATAAAGAAGGCAAGTGTTCAATCTATAgcatgttaagaaaaaaaaaatggttggaaaaatacactgtaaaacccaaaatgttaaggTCACTCAAACAATTttaggaaaccaattgcaacaaaccatttaagtccCCACAGTGATCTTGTATtattacaaaccatttgagttaaaaataaactaatctatatgagtactgtgaacttactccatttaagttaaagtaatgaggtcaTTGCCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040098 True 1186 mRNA 0.38 2 6757741 6759019

Neighbor

gene id symbol gene type direction distance location
XLOC_020129 CT583625.2 coding upstream 16319 6740039 ~ 6741422 (+)
XLOC_020128 CT583625.6 coding upstream 29827 6727266 ~ 6727914 (+)
XLOC_020127 CT583625.4 coding upstream 45544 6711549 ~ 6712197 (+)
XLOC_020126 CT583625.3 coding upstream 59166 6697927 ~ 6698575 (+)
XLOC_020125 si:ch211-209l18.2 coding upstream 66912 6613020 ~ 6690829 (+)
XLOC_020131 NA coding downstream 53130 6812149 ~ 6812872 (+)
XLOC_020132 NA coding downstream 72754 6831773 ~ 6970044 (+)
XLOC_020133 FO904898.3 coding downstream 84344 6843363 ~ 6854956 (+)
XLOC_020134 FO904898.2 coding downstream 99768 6858787 ~ 6859438 (+)
XLOC_020135 NA coding downstream 111272 6870291 ~ 6873611 (+)
XLOC_020123 NA non-coding upstream 53193 6570980 ~ 6704548 (+)
XLOC_020122 NA non-coding upstream 223727 6533698 ~ 6534014 (+)
XLOC_020120 NA non-coding upstream 258439 6494811 ~ 6499302 (+)
XLOC_020115 AL928685.3 non-coding upstream 467391 6290234 ~ 6290350 (+)
XLOC_020114 NA non-coding upstream 481558 6269446 ~ 6276183 (+)
XLOC_020136 NA non-coding downstream 120722 6879741 ~ 6881278 (+)
XLOC_020139 CU929149.1 non-coding downstream 184384 6943403 ~ 6949524 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_10172789_10173932 NA coding CI01000030 null 10172737 ~ 10173996 (-)