XLOC_020125 (si:ch211-209l18.2)


Basic Information

Item Value
gene id XLOC_020125
gene name si:ch211-209l18.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6613020 ~ 6690829 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040091
ATGTGGTGTGTTCCAGGTGTGTTTTGCGAGTCTGTGTCAGTGACGGAAGGAGATTCTGTCACTCTAAACTTTAATGTTACAGTGCAAAAAGATGATGTCTTACTGTGGAAATATGGAGCTGGGAATTCTTGCATTGCTAAAATCAGCAAAACGAAGCAAACCTTCACCACATATAATGATGTTCTTGAtgggagattcagagacagactgaagctggacaatcaaactggatctctgaccatcatgaACATCAGAAGTGAACATGCTGGAGATTATGAACTAGAGATAATAGGAGCACAACTGACAATAAGAACATTTAATATTTCTGTCTATGCTCGTTTGCCTGTTCCTGTCACCATCAGAGACtgttcttcctcctcctcttcattgTCCCAGTATAATTGTTCAGTGttgtgttcagtggtgaatgtgagtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggatgaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACCACACATCTGGACATCAACACACTCTGTCAGCTGTGTCCAGATGAGGATCTACATTGGTTTTACATCGTGTGGATGTGTGCTGTTGTTGGATCTCTGATGATTTTAGTGTCTGCCGTGATGTGCTGCATCTCCAAGAAACGTAGAAAAACAGGttag
>TCONS_00040092
AGCCGAGTTGTTTGGATACTGAGACAGATGATCGCTAGTAAACAAAGCGCCAGTGTTGTCAAACTACTGTTCTGACCTCATCAAACAACACACGCAACAAGCGGAAAACTGGAGAGCGCCTAGCAGGCAAAAAAGCTGGTAGTCCACGTACAGTTCATACGCTCACACAACGATGTCTCAAGGAAGCAACTAACCTCCCGAACCAGGGCGAAAGGAGCCCAGGAACGACCGCAGACACACACAGATGATACGGTGTGTTTAGTGAGATCGTGTCAGTGACGGAAGGAGATTCtgttactttaaactttaatgcTGTGCATGAAGGTGACCACATACTGTGGAAATATGGGGCTGAAAACACCCTCATTGCTAAAATCAACATAAAGCAGCAAGACTTCTTTACATTTGATGATGTTCTTGATGGGAGATTCAGAAACAGACTGAAACTGGATCATcaaactggatctctgaccattaCAAACATCAGATCCGAGCATGCTGGCATTTATGAACTAGAAATAATCGGATCAAAACTGACAATAGAAAAATTTAGTATTTCTGTCTATGCTCGTTTGCCTGTTCCTGTCACCATCAGAGACtgttcttcctcctcctcttcattgTCCCAGTATAATTGTTCAGTGttgtgttcagtggtgaatgtgagtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggatgaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACCACACATCTGGACATCAACACACTCTGTCAGCTGTGTCCAGATGAGGATCTACATTGGTTTTACATCGTGTGGATGTGTGCTGTTGTTGGATCTCTGATGATTTTAGTGTCTGCCGTGATGTGCTGCATCTCCAAGAAACGTAGAAAAACAGTTTATAATCAAGAAGAAGACCAATCGGATTCAACATCGTgcaaacaaaaatcacaaaaaacgAAATCAGACATGCAGGCTGTTTATTACAATGTCCCTAAAAGACGATGATCATATCTAGCCTATAGGCTTACTGGAACCAGAGCTAGAGCTCATCTTTCACTCCTTTTGGTTTCATTCACACATATTTTCTGCACAGATAAATTCTTTGTTTTGTCTTTGCATATTtggtgtaatattattattataaatttattgtaataattttgtttgtatttaaaaaaagtttaaccaATAGCACTCTGAAATGTAACCACAAAAAACATCCTAGTTTAATGTATGTATAATGCACATTAGCTATTAAATTCTGATCACATCCTTC
>TCONS_00040093
TCATAATTCACACAATAGTATCATACTCTGAGCAATTTGACACAGCTAAGCACTGAACTGCCTTTccaaaacatatgctagatattaaaaaataaagaatatttgTAACTTAAGAAGAGTTCAAATCATAAcgaagaccaaaaaaaaaaaattgaaacaaacaaaaaataacaacttcTAACGTGTAACAAACAGGGAGGGTCAATCCCTCTTGTGGGAGGAGTCACATGAGTTTAGTTCAGATGATTTTCAGTCTTGTTTAAACTGGTTGAAAGCAAGATGTTGTTTCACGTTTTTGCTTTGTTCTGTTTGTGCTGGAAGACCTTGTTCGGTGTGTTTAGTGAGATCGTGTCAGTGACGGAAGGAGATTCtgttactttaaactttaatgcTGTGCATGAAGGTGACCACATACTGTGGAAATATGGGGCTGAAAACACCCTCATTGCTAAAATCAACATAAAGCAGCAAGACTTCTTTACATTTGATGATGTTCTTGATGGGAGATTCAGAAACAGACTGAAACTGGATCATcaaactggatctctgaccattaCAAACATCAGATCCGAGCATGCTGGCATTTATGAACTAGAAATAATCGGATCAAAACTGACAATAGAAAAATTTAGTATTTCTGTCTATGCTCGTTTGCCTGTTCCTGTCACCATCAGAGACtgttcttcctcctcctcttcattgTCCCAGTATAATTGTTCAGTGttgtgttcagtggtgaatgtgagtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggatgaaaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACCACACATCTGGACATCAACACACTCTGTCAGCTGTGTCCAGATGAGGATCTACATTGGTTTTACATCGTGTGGATGTGTGCTGTTGTTGGATCTCTGATGATTTTAGTGTCTGCCGTGATGTGCTGCATCTCCAAGAAACGTAGAAAAACAGTTTATAATCAAGAAGAAGACCAATCGGATTCAACATCGTgcaaacaaaaatcacaaaaaacgAAATCAGACATGCAGGCTGTTTATTACAATGTCCCTAAAAGACGATGATCATATCTAGCCTATAGGCTTACTGGAACCAGAGCTAGAGCTCATCTTTCACTCCTTTTGGTTTCATTCACACATATTTTCTGCACAGATAAATTCTTTGTTTTGTCTTTGCATATTtggtgtaatattattattataaatttattgtaataattttgtttgtatttaaaaaaagtttaaccaATAGCACTCTGAAATGTAACCACAAAAAACATCCTAGTTTAATGTATGTATAATGCACATTAGCTATTAAATTCTGATCACATCCTTC

Function

symbol description
si:ch211-209l18.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-682 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000093111

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040091 False 744 mRNA 0.43 3 6613020 6683298
TCONS_00040092 False 1353 mRNA 0.40 6 6674992 6690829
TCONS_00040093 True 1432 mRNA 0.37 6 6677429 6690829

Neighbor

gene id symbol gene type direction distance location
XLOC_020124 CR352226.7 coding upstream 25092 6587280 ~ 6587928 (+)
XLOC_020122 NA coding upstream 79006 6533698 ~ 6534014 (+)
XLOC_020121 CR352226.6 coding upstream 97196 6512469 ~ 6515824 (+)
XLOC_020120 NA coding upstream 113718 6494811 ~ 6499302 (+)
XLOC_020119 si:ch211-105n15.1 coding upstream 137602 6471584 ~ 6475418 (+)
XLOC_020126 CT583625.3 coding downstream 7098 6697927 ~ 6698575 (+)
XLOC_020127 CT583625.4 coding downstream 20720 6711549 ~ 6712197 (+)
XLOC_020128 CT583625.6 coding downstream 36437 6727266 ~ 6727914 (+)
XLOC_020129 CT583625.2 coding downstream 49210 6740039 ~ 6741422 (+)
XLOC_020130 CT583625.1 coding downstream 66912 6757741 ~ 6759019 (+)
XLOC_020115 AL928685.3 non-coding upstream 322670 6290234 ~ 6290350 (+)
XLOC_020114 NA non-coding upstream 336837 6269446 ~ 6276183 (+)
XLOC_020111 NA non-coding upstream 446268 6165804 ~ 6166752 (+)
XLOC_020131 NA non-coding downstream 121320 6812149 ~ 6812872 (+)
XLOC_020132 NA non-coding downstream 140944 6831773 ~ 6970044 (+)
XLOC_020135 NA non-coding downstream 179462 6870291 ~ 6873611 (+)
XLOC_020136 NA non-coding downstream 188912 6879741 ~ 6881278 (+)
XLOC_020139 CU929149.1 non-coding downstream 252574 6943403 ~ 6949524 (+)

Expression


Co-expression Network