XLOC_020132


Basic Information

Item Value
gene id XLOC_020132
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6831773 ~ 6970044 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042033
CAGAAACATTGATGGTTTTTTCATAATTGGTGCCACTGCCGATGATCTGTTGGTGATAACCTCCAGAGTCTGTGCTTGTGGTGTTCATGATGGTCAGGGATCCAGTCTGATGATCCAGCTTCAGTCTGCCTCTGAATCTCTCAGTGCCATAATTGCATTGAACATCTGTACAGATATAACTGAGGTCTCCACTGATTACAGCGATACGAATGCCTTCATAAAACCACACAATTCTGTATTGTTGGTTGGTTTTAACACCAGTGTGTAGAGTGACTGAATCTCCTCTGCTCACAGACACATCATCTTTACCAACACCAGACACACCTGGAAGAAAAGCACAGTTCATTATTAGATCAACAATATCAAAACTACTTTTTGTGTGGTGTGACAGacatttttctaataataataataatagtaataataataatgttactatTAGTATGATTTCATAATGTCATATATTATACCACTGAGATCTCCTCTGATTTCAGCTATTTTAATCGTATCATAATACCATCTGATATAGTTTTGTTGATTTGTTTTAACACCAGTGTGTAGAGTGACTGAATCTTCATATTTCACCAACACTTCTACATTTGAATCAACAGCAGACACACCTGGAGAAGAAGAAAAGGGCAGTTCCTTATTTGTGTAAAGACTTTTAAGCATCCAAAGCAACACTATTCCAGGAATATCTTCCCAACTGATGTACTTTAGTAAACAGATAGACATTTGCACATGCACATGGCTTTGTTTAAGGATTATGTGTTATATTTTATACTAAATTCACATGCACACCGTAGTGAAAACTCATTGAACTCCAACACTTTGTTTTACGAGACATCACCAATACACTGTTGGATCCAGAAAAACCTGAGTGTGCCTTTCACGTCAGACACTAGCAGAGTGCGAGGGATCATGGGATTGATCTTGACGCGAAGAGTACTATCACTGAGAGATGGCCAGACAgaggcggactggccatctggcaattctggcaaatgccagaagggccggaccaattttttaaatgtgggccggtcagttttatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtcttttagttaatcatttggtagcAGAAatgacttatatgaaaggcaaaggcctctagattacgctgattttaccaaaataaaataggagaaataatgtacagtataaaatataaagtcatggtgcagtggaaaaataatgaataatgtgtatgactcccatgagcttggaagactgcatctatacatctctacaatgactcaaataacttattaataagttgtctgaaatggcaaagaaagcatttttgcaggactcccagagttcatcaagattctttggattcatctttaatgcctcctccttcatcttaccctagacatgctcaataatgttcatctctggtgactgggctggccaatcctagagcaccttgaccgtCTTTTCTTTtatgaactttgatgtggaggctgaagtatgaaaaggagcgctatcctgctgaacaatttgccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgatattaCACGTATGAAGCAACACTATTCCAGGAACATTTGATTAACTAAAGTACAACAGACAGATATTTACTCTGTAAATTAAGTTTAACTTTTGACATTCGCAGACATTCAGTTTGATACtcctaaaaaataaattaattgtaaattttttaaatatcaattttaGAACTGTAAATATACTCAGTAAACTTAGCAGTTTGTTTCAGATTTGACTTGCAAATTTCTCAgataattattatctttaataAACAAGGGTGGTTTTACATACAATCTGTTTCGTATTTCACAGAACATAAACATTACTTAATAAAACGATTCACATGGAATAATACATgcaattaaatgcattaaaataagctaaaaatacatttaagttgCTTACATTCCCTTTAATGAACAAGGCATTAAACTGAACGTCTAATGTCAAATGTTAAACTAAATGCACCACGTTACGTCACTATATATGTTAAGTTGCTGTACAAAATTAGCATTTACAGAGAAACGTTTTAAacgtgtatttattcattttgactGCTTATAATCGTTGACCAGGAAAGAAACTCGACGAACGACTACGATAGAGCAAAATAGTTACAGACAATGAACTACAGATAAAAAGATTGATGTCAAACTAAACTGTGACGTTTATTTTGACCGTTATTAGGAAAAGGGCTGAATAATGTCTTACCATTCTCGTGTAGACACAGCAGCAAAATGAGGAAAATGAAATGCTCCATGTTCAGTTTCTGAGTAAAAACAGAGTAGTAAGATGCAGATGTGTTACATTTATAGTGTTCTTGTTGGAGTGTGAAGTGATGAAATTATCTGAGACTGCTCCCACAGAGCGCAACATGTCATAACCTGAAAGCCACGCCCATTACGGGAAGATGCTGCCGCCTCGTCATTTCTGaggaatgacaaaaacaaaaactaattccgcagtaggtagtgctgtcgccttacagcaagaaggtcgctggttcgagcctcggctgggtcaattgtcAAAAATCCCCTTTTTTTGCTCAATATGATGAAACATTAAAGCATTTAGTTTGGGAGTGCACTTACTgtgttttgggttgacttttccaACTTCATGAAAACAATTCTTACTTCCAAACTTTTGTATTTccccaagaattgtgttgtttggtTACTCTCTGAATGTAGATACTTGtcattgtacatttattattaatttatttattttcgtcaAATTTTACATCCATATGTaaattttcaaagaaacacccttactTTTTATTATATGTGAATCTTTAAAAGATTCTAACAATTATATTGCATGTAAAACTCTTTCCttgtgtaaatcatttaaacttttaatttgctGAAATTTTATTTGTGTAACCCTTTTGTCACTTTGTTCATACTGTATCTTTCTAATATTCTTtcctgcataataataataaaaataatagtaaaaaaaacgaATTCCTTGTTAACCAAACTTTCCCCATTTTGTGAAGACTTCAAATTATATGTAAATCTTTAGGAACaaccacaaaacaaaaaagcactgAAATCAAGTCATtctctgaatatatatatatatatatatatatatattctctttcaaaaactatttaaatatataataccaAAACATTTGAAGAttgtaatatatatgtaaatacatgcacattgctgttttaccacaatATTAAATGTGGTAAATTAacatgtttaatataaataaaaaacttattcTACAACACAACATAcattataaaaacacattttagagtAGTCCTTGATAGccacatatatgtgtgtatttacatcTGCAACACATGTTTAGGGCATTTGCTCATCTGTCTCCGATGGATATTAGGTAGATGTCTAGAAAGTCTAAAAGTAACAACCTTACACTGATTATGGGACGTCCCAAGTGTGGTGTTCATCAATATGTCTCAGTCTGATAATGGGCTGTCTCACTGCTAGAGTTCATTGGTTGGTCATTGGACATCCTATTGTTAGCGTTCACCCCTGTATGAATAGAGGACGAGGCGTCATCATGATTGCCCTGCAAGAAAACAGATTCAATGAGGGTCAAAGACATAAACATGATTGaggttttaaaaaag
>TCONS_00042035
GCAACAATGAAGATCTTTTCTCCAATGCTGTCGTTGCTGAAGACCCGAAGACGTAAAACTCCAGAGTCCGTGTTTGTGATGTTCATGATGGCCAGAGATCCAGTCTGATGATCCAGCTTCAGTCTGCCTCTGAATCTCTCAGTGCCATAATTGCATTGAACATCTGTACAGATATAACTGAGGTCTCCACTGATTACAGCGATACGAATGCCTTCATAAAACCACACAATTCTGTATTGTTGGTTGGTTTTAACACCAGTGTGTAGAGTGACTGAATCTCCTCTGCTCACAGACACATCATCTTTACCAACACCAGACACACCTGGAAGAAAAGCACAGTTCATTATTAGATCAACA
>TCONS_00042039
cagagATCCAGTCTGATGATCCAGCTTCAGTCTGCCTCTGAATCTCTCAGTGCCATAATTGCATTGAACATCTGTACAGATATAACTGAGGTCTCCACTGATTACAGCGATACGAATGCCTTCATAAAACCACACAATTCTGTATTGTTGGTTGGTTTTAACACCAGTGTGTAGAGTGACTGAATCTCCTCTGCTCACAGACACATCATCTTTACCAACACCAGACACACCTGGAAGAAAAGCACAGTTCATTATTAGATCAACAATATCAAAACTACTTTTTGTGTGGTGTGACAGacatttttctaataataataataatagtaataataataatgttactatTAGTATGATTTCATAATGTCATATATTATACCACTGAGATCTCCTCTGATTTCAGCTATTTTAATCGTATCATAATACCATCTGATATAGTTTTGTTGATTTGTTTTAACACCAGTGTGTAGAGTGACTGAATCTTCATATTTCACCAACACTTCTACATTTGAATCAACAGCAGACACACCTGGAGAAGAAGAAAAGGGCAGTTCCTTATTTGTGTAAAGACTTTTAAGCATCCAAAGCAACACTATTCCAGGAATATCTTCCCAACTGATGTACTTTAGTAAACAGATAGACATTTGCACATGCACATGGCTTTGTTTAAGGATTATGTGTTATATTTTATACTAAATTCACATGCACACCGTAGTGAAAACTCATTGAACTCCAACACTTTGTTTTACGAGACATCACCAATACACTGTTGGATCCAGAAAAACCTGAGTGTGCCTTTCACGTCAGACACTAGCAGAGTGCGAGGGATCATGGGATTGATCTTGACGCGAAGAGTACTATCACTGAGAGATGGCCAGACAgaggcggactggccatctggcaattctggcaaatgccagaagggccggaccaattttttaaatgtgggccggtcagttttatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtcttttagttaatcatttggtagcAGAAatgacttatatgaaaggcaaaggcctctagattacgctgattttaccaaaataaaataggagaaataatgtacagtataaaatataaagtcatggtgcagtggaaaaataatgaataatgtgtatgactcccatgagcttggaagactgcatctatacatctctacaatgactcaaataacttattaataagttgtctgaaatggcaaagaaagcatttttgcaggactcccagagttcatcaagattctttggattcatctttaatgcctcctccttcatcttaccctagacatgctcaataatgttcatctctggtgactgggctggccaatcctagagcaccttgaccgtCTTTTCTTTtatgaactttgatgtggaggctgaagtatgaaaaggagcgctatcctgctgaacaatttgccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgatattaCACGTATGAAGCAACACTATTCCAGGAACATTTGATTAACTAAAGTACAACAGACAGATATTTACTCTGTAAATTAAGTTTAACTTTTGACATTCGCAGACATTCAGTTTGATACtcctaaaaaataaattaattgtaaattttttaaatatcaattttaGAACTGTAAATATACTCAGTAAACTTAGCAGTTTGTTTCAGATTTGACTTGCAAATTTCTCAgataattattatctttaataAACAAGGGTGGTTTTACATACAATCTGTTTCGTATTTCACAGAACATAAACATTACTTAATAAAACGATTCACATGGAATAATACATgcaattaaatgcattaaaataagctaaaaatacatttaagttgCTTACATTCCCTTTAATGAACAAGGCATTAAACTGAACGTCTAATGTCAAATGTTAAACTAAATGCACCACGTTACGTCACTATATATGTTAAGTTGCTGTACAAAATTAGCATTTACAGAGAAACGTTTTAAacgtgtatttattcattttgactGCTTATAATCGTTGACCAGGAAAGAAACTCGACGAACGACTACGATAGAGCAAAATAGTTACAGACAATGAACTACAGATAAAAAGATTGATGTCAAACTAAACTGTGACGTTTATTTTGACCGTTATTAGGAAAAGGGCTGAATAATGTCTTACCATTCTCGTGTAGACACAGCAGCAAAATGAGGAAAATGAAATGCTCCATGTTCAGTTTCTGAGTAAAAACAGAGTAGTAAGATGCAGATGTGTTACATTTATAGTGTTCTTGTTGGAGTGTGAAGTGATGAAATTATCTGAGACTGCTCCCACAGAGCGCAACATGTCATAACCTGAAAGCCACGCCCATTACGGGAAGATGCTGCCGCCTCGTCATTTCTGaggaatgacaaaaacaaaaactaattccgcagtaggtagtgctgtcgccttacagcaagaaggtcgctggttcgagcctcggctgggtcaattgtcAAAAATCCCCTTTTTTTGCTCAATATGATGAAACATTAAAGCATTTAGTTTGGGAGTGCACTTACTgtgttttgggttgacttttccaACTTCATGAAAACAATTCTTACTTCCAAACTTTTGTATTTccccaagaattgtgttgtttggtTACTCTCTGAATGTAGATACTTGtcattgtacatttattattaatttatttattttcgtcaAATTTTACATCCATATGTaaattttcaaagaaacacccttactTTTTATTATATGTGAATCTTTAAAAGATTCTAACAATTATATTGCATGTAAAACTCTTTCCttgtgtaaatcatttaaacttttaatttgctGAAATTTTATTTGTGTAACCCTTTTGTCACTTTGTTCATACTGTATCTTTCTAATATTCTTtcctgcataataataataaaaataatagtaaaaaaaacgaATTCCTTGTTAACCAAACTTTCCCCATTTTGTGAAGACTTCAAATTATATGTAAATCTTTAGGAACaaccacaaaacaaaaaagcactgAAATCAAGTCATtctctgaatatatatatatatatatatatatatattctctttcaaaaactatttaaatatataataccaAAACATTTGAAGAttgtaatatatatgtaaatacatgcacattgctgttttaccacaatATTAAATGTGGTAAATTAacatgtttaatataaataaaaaacttattcTACAACACAACATAcattataaaaacacattttagagtAGTCCTTGATAGccacatatatgtgtgtatttacatcTGCAACACATGTTTAGGGCATTTGCTCATCTGTCTCCGATGGATATTAGGTAGATGTCTAGAAAGTCTAAAAGTAACAACCTTACACTGATTATGGGACGTCCCAAGTGTGGTGTTCATCAATATGTCTCAGTCTGATAATGGGCTGTCTCACTGCTAGAGTTCATTGGTTGGTCATTGGACATCCTATTGTTAGCGTTCACCCCTGTATGAATAGAGGACGAGGCGTCATCATGATTGCCCTGCAAGAAAACAGATTCAATGAGGGTCAAAGACATAAACATGATTGaggttttaaaaaag
>TCONS_00042040
CTCACCATGAACAACAACTCTGAAGATCTTTTTACTCAAGCGGAAGCTGCTAAAGATCAGTAGCTGATATTCTCCAGCATCTGTGTTTCTGCTGTtcatgatggtcagagATCCAGTCTGATGATCCAGCTTCAGTCTGCCTCTGAATCTCTCAGTGCCATAATTGCATTGAACATCTGTACAGATATAACTGAGGTCTCCACTGATTACAGCGATACGAATGCCTTCATAAAACCACACAATTCTGTATTGTTGGTTGGTTTTAACACCAGTGTGTAGAGTGACTGAATCTCCTCTGCTCACAGACACATCATCTTTACCAACACCAGACACACCTGGAAGAAAAGCACAGTTCATTATTAGATCAACA

Function

GO:

id name namespace
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0006325 chromatin organization biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006996 organelle organization biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000793 condensed chromosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042033 False 3741 lncRNA 0.34 3 6831773 6970044
TCONS_00042035 False 357 lncRNA 0.43 2 6882310 6966536
TCONS_00042039 False 3647 lncRNA 0.34 3 6954264 6970044
TCONS_00042040 True 370 lncRNA 0.42 2 6956394 6966536

Neighbor

gene id symbol gene type direction distance location
XLOC_020131 NA coding upstream 18901 6812149 ~ 6812872 (+)
XLOC_020130 CT583625.1 coding upstream 72754 6757741 ~ 6759019 (+)
XLOC_020129 CT583625.2 coding upstream 90351 6740039 ~ 6741422 (+)
XLOC_020128 CT583625.6 coding upstream 103859 6727266 ~ 6727914 (+)
XLOC_020127 CT583625.4 coding upstream 119576 6711549 ~ 6712197 (+)
XLOC_020140 NA coding downstream 55418 7025462 ~ 7027516 (+)
XLOC_020141 NA coding downstream 63204 7033248 ~ 7067789 (+)
XLOC_020142 cela1.6 coding downstream 469142 7439186 ~ 7447391 (+)
XLOC_020143 NA coding downstream 482129 7452173 ~ 7452420 (+)
XLOC_020144 cela1.1 coding downstream 492953 7462997 ~ 7470338 (+)
XLOC_020123 NA non-coding upstream 127225 6570980 ~ 6704548 (+)
XLOC_020122 NA non-coding upstream 297759 6533698 ~ 6534014 (+)
XLOC_020120 NA non-coding upstream 332471 6494811 ~ 6499302 (+)
XLOC_020115 AL928685.3 non-coding upstream 541423 6290234 ~ 6290350 (+)
XLOC_020149 NA non-coding downstream 575780 7545824 ~ 7556620 (+)
XLOC_020151 NA non-coding downstream 706308 7676352 ~ 7972344 (+)

Expression


Co-expression Network