RNA id: TU186160


Basic Information

Item Value
RNA id TU186160
length 546
RNA type TUCP
GC content 0.56
exon number 2
gene id G163873
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8933413 ~ 8933982 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGATGGATGGATGGGTGGATGTGTGGATGCATGGATGGGTGGGTGGGTGGGTGGATGGATGGATGGATGGGTGGGTGGGTGGATGGATGGATGGACGGAGGGATGGGTGGATGATGTGGATGTATGGATGGGTGGATGGACAGATGAATTGGTGGATGGATGGACAAATGAATGGATGGATGGATGGAAGGACAGATGGACGGAGGGATGGATTGATGGATGGAAGGACGGACGGACGGAGGGATGGATGGATCGATGGATGGGTGGATGTGTGGATGTGCGGATGGATGGGTGGGTGGGTGTATGGATGGACAGATGGCTGGATGGATGGACGGATGGCTGGATGGATGGATGGATGGATAGATGAGTGGATGAGTGGATGGATGGGTGGGTGGGTGGATNTGGGTGGGTGGATGGATGGATGGATGGGTGGGTGGATGGGTGGATGTGTGGATGCATGGATGGGTGGATGGATGGGTGAATGGGTGGATGGATGGATGGATGGACGGAGGGATGGATTGATGGATGGAAGGACGGACGGACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186159 lncRNA downstream 66 8932505 ~ 8933347 (-) True G163872
TU185909 lncRNA downstream 58308 8874451 ~ 8875105 (-) True G163632
TU185881 lncRNA downstream 132847 8800207 ~ 8800566 (-) False G163610
TU185882 lncRNA downstream 132847 8800301 ~ 8800566 (-) True G163610
TU185868 lncRNA downstream 146477 8786674 ~ 8786936 (-) True G163598
TU186164 lncRNA upstream 159 8934141 ~ 8934983 (-) True CI01000030_08934545_08939716
TU186165 lncRNA upstream 1159 8935141 ~ 8935887 (-) True G163875
TU186265 lncRNA upstream 215662 9149644 ~ 9150346 (-) False G163970
TU186262 lncRNA upstream 215722 9149704 ~ 9150346 (-) True G163970
TU186269 lncRNA upstream 231952 9165934 ~ 9168180 (-) True G163971
CI01000030_08919811_08923927.mRNA mRNA downstream 9486 8919555 ~ 8923927 (-) True CI01000030_08919811_08923927
CI01000030_08880986_08884756.mRNA mRNA downstream 48642 8880953 ~ 8884771 (-) True CI01000030_08880986_08884756
CI01000030_08825422_08836502.mRNA mRNA downstream 96286 8825241 ~ 8837127 (-) True CI01000030_08825422_08836502
CI01000030_08804429_08811448.mRNA mRNA downstream 120843 8804270 ~ 8812570 (-) True CI01000030_08804429_08811448
CI01000030_08742145_08754205.mRNA mRNA downstream 177812 8742040 ~ 8755601 (-) True CI01000030_08742145_08754205
CI01000030_08934545_08939716.mRNA mRNA upstream 261 8934243 ~ 8939719 (-) False CI01000030_08934545_08939716
CI01000030_09038299_09059689.mRNA mRNA upstream 104266 9038248 ~ 9060020 (-) True CI01000030_09038299_09059689
CI01000030_09176691_09178066.mRNA mRNA upstream 242663 9176645 ~ 9178066 (-) True CI01000030_09176691_09178066
CI01000030_09225959_09236989.mRNA mRNA upstream 291350 9225332 ~ 9239282 (-) False CI01000030_09225959_09236989
CI01000030_09253701_09256358.mRNA mRNA upstream 318133 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
TU185749 other downstream 740927 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1141031 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1195409 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1783269 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 2007756 6924483 ~ 6925657 (-) True G163065
TU185995 other upstream 353224 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 541206 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1181533 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1351747 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 1413378 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087

Expression Profile