RNA id: TU186165


Basic Information

Item Value
RNA id TU186165
length 747
lncRNA type intronic
GC content 0.37
exon number 1
gene id G163875
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8935141 ~ 8935887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGTTGTAGTCCTTCAACAGAGAATTCTTTAAAAGAAAATATTTCCCTTTGCATTGAACTTTGAGCGTCCTAACTTTGCAGATGTTGTTTATGCTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTAAAATCATAATCAACCACCCATTTAAAGTAAGTGATTATGCGTTTATTTATAGTGTGATCTGTCACGGAAGCCAGCAAAATTATGAAAAATAAAGACAATGATGAGACAAAAGACAGCAGAATTTTGAAACTTCTATGATTTGAGCCCTCATGTTTTGCTTGTATTATAGAGCTGTCTCTGCAATACTTAAGAGTTCTGACACATCACTGGCCTTCTACTGACTACCTTTCACAACTGTCTTGATAACGTTGGGTATGTAAAATCTTTGAATAGACTCCCATGAGCGCAGAATCGTGACAAATGTTGATCTCGAGTGACGTAAAAATTGCATGAATTCCAATATGACTGTTCACAATGCGGTCGCATTACAAAACATCTGACCTGTATCGGATTTAGTACCACATATGGAAGTGGCACAAATCAGAATTGAAATATCAGATTCCATGTGGTTTATACTGTTCACATTGTTCACATTGAGTCACATGTGGGCAAAAAAAACAACACATTTACCTGCAGTGTGAACGTAGCCTAAGTGCAACCAGACAAACCATAAAACTCTTTGGCATCTCCAACTCTAAGACAGCAATAAGATTAAACTGAGAGATCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186164 lncRNA downstream 158 8934141 ~ 8934983 (-) True CI01000030_08934545_08939716
TU186159 lncRNA downstream 1794 8932505 ~ 8933347 (-) True G163872
TU185909 lncRNA downstream 60036 8874451 ~ 8875105 (-) True G163632
TU185881 lncRNA downstream 134575 8800207 ~ 8800566 (-) False G163610
TU185882 lncRNA downstream 134575 8800301 ~ 8800566 (-) True G163610
TU186265 lncRNA upstream 213757 9149644 ~ 9150346 (-) False G163970
TU186262 lncRNA upstream 213817 9149704 ~ 9150346 (-) True G163970
TU186269 lncRNA upstream 230047 9165934 ~ 9168180 (-) True G163971
TU185929 lncRNA upstream 239427 9175314 ~ 9176251 (-) True G163650
TU186287 lncRNA upstream 260037 9195924 ~ 9197189 (-) True G163988
CI01000030_08919811_08923927.mRNA mRNA downstream 11214 8919555 ~ 8923927 (-) True CI01000030_08919811_08923927
CI01000030_08880986_08884756.mRNA mRNA downstream 50370 8880953 ~ 8884771 (-) True CI01000030_08880986_08884756
CI01000030_08825422_08836502.mRNA mRNA downstream 98014 8825241 ~ 8837127 (-) True CI01000030_08825422_08836502
CI01000030_08804429_08811448.mRNA mRNA downstream 122571 8804270 ~ 8812570 (-) True CI01000030_08804429_08811448
CI01000030_08742145_08754205.mRNA mRNA downstream 179540 8742040 ~ 8755601 (-) True CI01000030_08742145_08754205
CI01000030_09038299_09059689.mRNA mRNA upstream 102361 9038248 ~ 9060020 (-) True CI01000030_09038299_09059689
CI01000030_09176691_09178066.mRNA mRNA upstream 240758 9176645 ~ 9178066 (-) True CI01000030_09176691_09178066
CI01000030_09225959_09236989.mRNA mRNA upstream 289445 9225332 ~ 9239282 (-) False CI01000030_09225959_09236989
CI01000030_09253701_09256358.mRNA mRNA upstream 316228 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
CI01000030_09277337_09294501.mRNA mRNA upstream 340544 9276431 ~ 9294802 (-) False CI01000030_09277337_09294501
TU186160 other downstream 1159 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 742655 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1142759 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1197137 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1784997 7149474 ~ 7150144 (-) True G163139
TU185995 other upstream 351319 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 539301 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1179628 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1349842 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 1411473 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087

Expression Profile