RNA id: CI01000030_08919811_08923927.mRNA



Basic Information


Item Value
RNA id CI01000030_08919811_08923927.mRNA
length 977
RNA type mRNA
GC content 0.48
exon number 5
gene id CI01000030_08919811_08923927
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8919555 ~ 8923927 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTCGAGGACTTGGCGTGTTGTCCTGGGCGACCATGACATCTACACCCATGAAGGTCGCGAGCAGTACATGAGCGTCAGTCAAGTGTACATCCACTCCGGCTGGAACAGCAACAGTGTGGCTGCTGGATATGATATTGCTCTTCTGCGTCTGTCCTCTGAAGCCACTCTGAACTCATATGTGAAGCTGGCCACCCTTCCACCCTCTGGACAGGTTCTGCCCCACAACAACGTCTGTTACATCACCGGCTGGGGCCGCACTCAGACTGGTGGGTCGCTCTCTGCTCAGCTGAAACAGGCCTACCTGCCCGTGGTGGACTACAGTACCTGCTCTCGTAGCGACTGGTGGGGAAGCACCGTGAAGAACACCATGGTGTGCGCTGGTGGCGGCAGCTTGTCTGGATGCAATGGTGACTCTGGTGGTCCTCTGAACTGCCAGGTGAGTGGTCAGTACGTCGTCCATGGAGTGACCAGCTTTGTGTCATCATTGGGTTGCAATACCTACCAGAAGCCAACAGTCTTCACTCGTGTGTCTGCCTACAGCAGCTGGATTAGTAGCAGATCCAGTTTGATGATTCAGATTGAGTATGTTTTTGAGTTTTCCTTCAGTACCATAATAAGCACAGGCACTTTTATTCATTTCTCTTTTAGCTATGAGTCTATCTTCAGCTCCAAACAACCACAGTATCAGATCATCATCTTGTATTTCAGTATCATTGTATAGCGTGACCGAATCTCCCTCTGTCGCTGATACAGTCTTCTCTTTATTTTGTCCCGGCACCACATAAAAGAGAAAAACATGGACATTATAACAGGTGATCTGACTGCCACGTTAACATTGAAACTAACTGCTGACATTAATTACGAAGTCAAGAGGGTAAATTTTGCTCAATATTGTGATGGATTTCTGCGTTGGACCCACAAAAACTAATACAGGTTTGGATTTGGACTGACATTTCAGTGTTGAACTATTTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185909 lncRNA downstream 44450 8874451 ~ 8875105 (-) True G163632
TU185881 lncRNA downstream 118989 8800207 ~ 8800566 (-) False G163610
TU185882 lncRNA downstream 118989 8800301 ~ 8800566 (-) True G163610
TU185868 lncRNA downstream 132619 8786674 ~ 8786936 (-) True G163598
TU185875 lncRNA downstream 136623 8782692 ~ 8782932 (-) True G163605
TU186159 lncRNA upstream 8578 8932505 ~ 8933347 (-) True G163872
TU186164 lncRNA upstream 10214 8934141 ~ 8934983 (-) True CI01000030_08934545_08939716
TU186165 lncRNA upstream 11214 8935141 ~ 8935887 (-) True G163875
TU186265 lncRNA upstream 225717 9149644 ~ 9150346 (-) False G163970
TU186262 lncRNA upstream 225777 9149704 ~ 9150346 (-) True G163970
CI01000030_08880986_08884756.mRNA mRNA downstream 34784 8880953 ~ 8884771 (-) True CI01000030_08880986_08884756
CI01000030_08825422_08836502.mRNA mRNA downstream 82428 8825241 ~ 8837127 (-) True CI01000030_08825422_08836502
CI01000030_08804429_08811448.mRNA mRNA downstream 106985 8804270 ~ 8812570 (-) True CI01000030_08804429_08811448
CI01000030_08742145_08754205.mRNA mRNA downstream 163954 8742040 ~ 8755601 (-) True CI01000030_08742145_08754205
CI01000030_08729507_08739473.mRNA mRNA downstream 180040 8728693 ~ 8739515 (-) True CI01000030_08729507_08739473
CI01000030_08934545_08939716.mRNA mRNA upstream 10316 8934243 ~ 8939719 (-) False CI01000030_08934545_08939716
CI01000030_09038299_09059689.mRNA mRNA upstream 114321 9038248 ~ 9060020 (-) True CI01000030_09038299_09059689
CI01000030_09176691_09178066.mRNA mRNA upstream 252718 9176645 ~ 9178066 (-) True CI01000030_09176691_09178066
CI01000030_09225959_09236989.mRNA mRNA upstream 301405 9225332 ~ 9239282 (-) False CI01000030_09225959_09236989
CI01000030_09253701_09256358.mRNA mRNA upstream 328188 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
TU185749 other downstream 727069 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1127173 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1181551 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1769411 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1993898 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 9486 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 363279 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 551261 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1191588 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1361802 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile