RNA id: TU185875


Basic Information

Item Value
RNA id TU185875
length 241
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G163605
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8782692 ~ 8782932 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCTCTTCCGCATAACCGTTAACTTTCTTTGTTTAACATTAACAGTTCTATATCTAATGTAGGTCTGTCGCAATAATCAATATATCGACTTGTCGCGCAATATATGTACGTGACCTCAATAATTTTTGGTGTCGCAATATATGATTATTTTCATAATATATTCATACATTATGTTTACATGATAATGAATGTCACCAACATTTTGCCAATCATGCTGTCATCTGCAGTTCCTACACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185873 lncRNA downstream 669 8781738 ~ 8782023 (-) True G163603
TU185849 lncRNA downstream 30908 8751423 ~ 8751784 (-) True G163586
TU185841 lncRNA downstream 88308 8694133 ~ 8694384 (-) True G163579
TU185638 lncRNA downstream 91123 8678015 ~ 8691569 (-) True G163390
TU185837 lncRNA downstream 132115 8650253 ~ 8650577 (-) True G163575
TU185868 lncRNA upstream 3742 8786674 ~ 8786936 (-) True G163598
TU185881 lncRNA upstream 17275 8800207 ~ 8800566 (-) False G163610
TU185882 lncRNA upstream 17369 8800301 ~ 8800566 (-) True G163610
TU185909 lncRNA upstream 91519 8874451 ~ 8875105 (-) True G163632
TU186159 lncRNA upstream 149573 8932505 ~ 8933347 (-) True G163872
CI01000030_08742145_08754205.mRNA mRNA downstream 27091 8742040 ~ 8755601 (-) True CI01000030_08742145_08754205
CI01000030_08729507_08739473.mRNA mRNA downstream 43177 8728693 ~ 8739515 (-) True CI01000030_08729507_08739473
CI01000030_08704610_08727738.mRNA mRNA downstream 54938 8704532 ~ 8727754 (-) True CI01000030_08704610_08727738
CI01000030_08671133_08672774.mRNA mRNA downstream 109918 8671092 ~ 8672774 (-) True CI01000030_08671133_08672774
CI01000030_08638306_08669065.mRNA mRNA downstream 113627 8637618 ~ 8669065 (-) True CI01000030_08638306_08669065
CI01000030_08804429_08811448.mRNA mRNA upstream 21338 8804270 ~ 8812570 (-) True CI01000030_08804429_08811448
CI01000030_08825422_08836502.mRNA mRNA upstream 42309 8825241 ~ 8837127 (-) True CI01000030_08825422_08836502
CI01000030_08880986_08884756.mRNA mRNA upstream 98021 8880953 ~ 8884771 (-) True CI01000030_08880986_08884756
CI01000030_08919811_08923927.mRNA mRNA upstream 136623 8919555 ~ 8923927 (-) True CI01000030_08919811_08923927
CI01000030_08934545_08939716.mRNA mRNA upstream 151311 8934243 ~ 8939719 (-) False CI01000030_08934545_08939716
TU185749 other downstream 590206 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 990310 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1044688 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 1632548 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 1857035 6924483 ~ 6925657 (-) True G163065
TU186160 other upstream 150481 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 504274 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 692256 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 1332583 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 1502797 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039

Expression Profile