RNA id: TU185223


Basic Information

Item Value
RNA id TU185223
length 1001
RNA type TUCP
GC content 0.41
exon number 2
gene id G163065
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6924483 ~ 6925657 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGATTCCAAAAAAGTTGGGACACTGTACAAATTGTGAATAAAAAAGGAATGCAATAATTTACAAATCTCATAAACTTATATTTTATTCACAATAGAATATAGATAACATATCAAATGTTGAAAGTGAGACATTTTGAAATGTCATGCCAAATATTGGCTCATTTTGGATTTCATGAAAGCTACACATTCCAAAAAATTTGTGACAGGTAGCAATAAGAGGCCAGAAAAGTTAAATGTACATGTAAGGAACAGCTGGAGGACCAATTTGCAACTTATTAGGTCAATTGGCAACGTGATTGGGTATAAAAAGAGCCTCTCAGAGTGGCAGTGTCTCTCAGAAGTCAAGATGGGCAGAGGATTACCAGTTCCCCCAATGCTGCGGCGAAAAATAGTGGAGCAATATCAGAAAGGAGTTTGAAGAAAAATGAGTTTGAGAAAAATTGCAAAGAGTTTGAAATTATCATCATCTACAGTGCATAATATCATCCAAAGATTCAGAGAATCAGGAACAATTTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTCGGGCCCTTAGACGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACTAAATTTGAAGTTCTTTTTGGAAAACTGGGACGCCATGTCATCCAGACTAAAGAGGACAAAGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGGGCAGCTTACACATCTGGAAAGGCACCATCAATGCTGAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGACGTCGTCTCTTTCAGGGAAGACCTTGCATTTTCCAACATGACAATGCCAGACCACATACTGCATCAATTACAACATCATGGCTGCGTAGAAGAAGGATCCGGGTACTGAAATGGCCAGCCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185211 lncRNA downstream 23562 6899944 ~ 6900921 (-) True G163053
TU185195 lncRNA downstream 56588 6867085 ~ 6867895 (-) False G163043
TU185198 lncRNA downstream 56722 6867247 ~ 6867761 (-) True G163043
TU185186 lncRNA downstream 82713 6841425 ~ 6841770 (-) True CI01000030_06841490_06848643
TU183407 lncRNA downstream 324626 6594369 ~ 6599857 (-) True G161519
TU185228 lncRNA upstream 18488 6944145 ~ 6944501 (-) True G163070
TU185184 lncRNA upstream 36406 6962063 ~ 6962326 (-) True G163033
TU185180 lncRNA upstream 36763 6962420 ~ 6962665 (-) True G163030
TU185234 lncRNA upstream 42416 6968073 ~ 6968443 (-) True G163076
TU185236 lncRNA upstream 43358 6969015 ~ 6969270 (-) True G163078
CI01000030_06886173_06894325.mRNA mRNA downstream 30054 6886157 ~ 6894429 (-) True CI01000030_06886173_06894325
CI01000030_06841490_06848643.mRNA mRNA downstream 75824 6841072 ~ 6848659 (-) False CI01000030_06841490_06848643
CI01000030_06837243_06838315.mRNA mRNA downstream 85960 6837110 ~ 6838523 (-) True CI01000030_06837243_06838315
CI01000030_06825126_06834282.mRNA mRNA downstream 89339 6825073 ~ 6835144 (-) True CI01000030_06825126_06834282
CI01000030_06810754_06819241.mRNA mRNA downstream 105242 6810593 ~ 6819241 (-) True CI01000030_06810754_06819241
CI01000030_06940324_06983295.mRNA mRNA upstream 14567 6940224 ~ 6983963 (-) False CI01000030_06940324_06983295
CI01000030_06985089_06988057.mRNA mRNA upstream 58600 6984257 ~ 6988104 (-) True CI01000030_06985089_06988057
CI01000030_07002565_07003644.mRNA mRNA upstream 76578 7002235 ~ 7003945 (-) True CI01000030_07002565_07003644
CI01000030_07008035_07011384.mRNA mRNA upstream 82176 7007833 ~ 7011384 (-) True CI01000030_07008035_07011384
CI01000030_07072355_07077515.mRNA mRNA upstream 146224 7071881 ~ 7077515 (-) True CI01000030_07072355_07077515
TU183403 other downstream 172072 6743298 ~ 6745350 (-) True G161515
TU183401 other downstream 172167 6743258 ~ 6745350 (-) False G161515
TU183402 other downstream 172167 6743298 ~ 6745350 (-) False G161515
TU183395 other downstream 219738 6701731 ~ 6704145 (-) True G161511
TU183215 other downstream 786077 6133375 ~ 6133500 (-) True G161355
TU185332 other upstream 223817 7149474 ~ 7150144 (-) True G163139
TU185612 other upstream 809779 7737975 ~ 7738004 (-) True G163364
TU185614 other upstream 863140 7792243 ~ 7792382 (-) True G163366
TU185749 other upstream 1266262 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 2007756 8933413 ~ 8933982 (-) True G163873

Expression Profile