RNA id: TU185614


Basic Information

Item Value
RNA id TU185614
length 140
RNA type TUCP
GC content 0.47
exon number 1
gene id G163366
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7792243 ~ 7792382 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGAGAGTGTCTTGATTCACTGTTTGATCTGCTGCGGTTCGTTTCTGACTTTACACACTCAATAAATCTGTTCAAAGCCGCTGTAATTCGCATTATATCATCTGCTCTGCTTCATTTAACATCAAGAGACTGTATTCAACTGTACGTCTGTCCCAAGTGTGACCCGACCAGGAGGAGAATGTTCTGCGGCCCATGATGGGCGGCAGCGGGTCTAAAGGTAAAGGGTACTGGCCGTTCTCTGGTTCGGGTAGCGGGGATGAACCTGCCAAAGACGGCCAAGAGCAGAGCCTGGCCAGGGTACGGAGCATTCGAAATGCGACGCCTTTCGTGTTTACCAGGAGGAGCTCTTTGTACTTCGATGAGGACGGTGACCTGGCCCATGAGTTTTATGAAGAAACGGTAGTAACGAAAAACGGCCGTAAGAAAGCCAAACTAAAACGAATCCACAAGAATCTCATACCTCAGGGAATCATCAAGTTGGATCACCCTTGTATCCACGTTGATTTTCCGGTCGTCATCTGTGAAGCTTGATGCCGTCGGTGACCTCCTGTGAAGATTCCGTCCTCCCTCATTTTCCTCCCGACCGCTGGATCCTGGACACGCTTGCTGTGAAGCGCCCCCGTGAGTTTGGGAGGGCTCGACGCGTGTATGTGGAATCCCGGCAAACAGGCCGCGAGATGTTCTGGCTGTCTGCCTGAGAAGAGGCTGTGGCCTGGCAATGATGTCCTGACTCTTTTCGTTTTCTTGTAATCCTCCACATGTGCGTCTTGAAGACTATTATGGGCTGTATGGCCAAGACACTAAGTGTGGTTTGTATATGACTGTATGGCTGTTTGTTTGTTAGTATATGACCATAGAAATAGAGAATATTTAGCGATGTTTGACTTTTATCTGGAGCACATCATGAAGGACTTTGGAGGACCTTCTAGAACGTTCTGTTTAGAATTCCGAAGAAGTTCTAGAAGCCCTCAGAAAGATCAGGTTGCATTTGAATGCTTTAATCAGCGGACATTGTATAACAAGCAGAGCTTCGCAGATCGTCAGGATGCGATGTTCGTAGAGGTAACGCAGTTAGGGTTAGTACAAAATAAGTAAAACTACAGCCTGAATTTTGCATGTAGTTCCTATAGACCTGATTCTGCTTTATTTTCAGCCAGTAGGAGATAATCAATGGCTGTTTACTACGCTGTGATTTGTTTGTATGCTGATTGGATGATGGAATTGCTGCCGCTCCTTGATTGGACAGTTGAGGCACTGACTGACACAGTTATGACAGTCACTGTGAGAAGCCCCGCCCCCCCCTCACTGTTGTGGCAGTCTTTATTTATTACAGTTGAAATGACCAGTTGGCATTAAAGAAAATACCAC

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185687 lncRNA downstream 7245 7781244 ~ 7781552 (-) True G163439
TU185683 lncRNA downstream 61394 7727193 ~ 7727403 (-) True G163435
TU185681 lncRNA downstream 85088 7703408 ~ 7703709 (-) True G163433
TU185664 lncRNA downstream 133183 7655039 ~ 7655614 (-) True G163416
TU185663 lncRNA downstream 135819 7652602 ~ 7652978 (-) True G163415
TU185691 lncRNA upstream 9750 7802132 ~ 7802579 (-) True CI01000030_07802211_07804196
TU185693 lncRNA upstream 37309 7829691 ~ 7830162 (-) False G163445
TU185694 lncRNA upstream 37309 7829691 ~ 7830607 (-) True G163445
TU185697 lncRNA upstream 51430 7843812 ~ 7844268 (-) True G163448
TU185698 lncRNA upstream 52638 7845020 ~ 7845475 (-) True G163449
CI01000030_07769918_07776928.mRNA mRNA downstream 11869 7768948 ~ 7776928 (-) True CI01000030_07769918_07776928
CI01000030_07761302_07764226.mRNA mRNA downstream 24571 7761302 ~ 7764226 (-) True CI01000030_07761302_07764226
CI01000030_07749038_07754607.mRNA mRNA downstream 34190 7748786 ~ 7754607 (-) True CI01000030_07749038_07754607
CI01000030_07736031_07737720.mRNA mRNA downstream 51077 7735746 ~ 7737720 (-) False CI01000030_07736031_07737720
CI01000030_07726597_07733277.mRNA mRNA downstream 54208 7726389 ~ 7734589 (-) True CI01000030_07726597_07733277
CI01000030_07794056_07801708.mRNA mRNA upstream 1289 7793671 ~ 7801708 (-) True CI01000030_07794056_07801708
CI01000030_07802211_07804196.mRNA mRNA upstream 9667 7802049 ~ 7804223 (-) False CI01000030_07802211_07804196
CI01000030_07810359_07822361.mRNA mRNA upstream 17977 7810359 ~ 7822361 (-) True CI01000030_07810359_07822361
CI01000030_07889005_07897250.mRNA mRNA upstream 95949 7888331 ~ 7897250 (-) True CI01000030_07889005_07897250
CI01000030_07901178_07901441.mRNA mRNA upstream 108208 7900590 ~ 7901441 (-) True CI01000030_07901178_07901441
TU185612 other downstream 50793 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 638653 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 863140 6924483 ~ 6925657 (-) True G163065
TU183403 other downstream 1036386 6743298 ~ 6745350 (-) True G161515
TU183401 other downstream 1036481 6743258 ~ 6745350 (-) False G161515
TU185749 other upstream 399537 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 1141031 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 1494824 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 1682806 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 2323133 10121592 ~ 10121720 (-) True G163717

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040226 False 1346 mRNA 0.47 4 NC_007133.7 10660140 ~ 10663935 (+)
grasscarp (Ctenopharyngodon idella) TU221709 True 241 lncRNA 0.37 1 CI01000046 376921 ~ 377161 (-)
tiger barb (Puntius tetrazona) TU221709 False 1358 TUCP 0.52 4 NC_056720.1 5803776 ~ 5806623 (+)