RNA id: CI01000030_07901178_07901441.mRNA


Basic Information

Item Value
RNA id CI01000030_07901178_07901441.mRNA
length 852
RNA type mRNA
GC content 0.35
exon number 1
gene id CI01000030_07901178_07901441
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7900590 ~ 7901441 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGTTTTCGTCCATTTTATCCAGTTCCATAACCCAGAAGAACCGTAAACTTATCGGGTTTTGGCGCAGATTTGATACTCTGGGCGAGATGATCGGGGTCAGGCGTAAAACTTCTGGTGAATCCGTGTCTGACACACCGACGGGTGTAGCGCTACTACCGCTTTTGCGAGGACACGCCCTCCTCTGCGCTCTCATTGGTCAGACGCAGAGGTTGCGGGTTTTTCATTGGCTAAAAGTGTTTGACATTGTTAAATGCATCCGCTAATTGGATGCTAAAAATGTCAATCAAATGTTCGCACTCTTCTGAGCGCAGTTTATAGACTGTATCTATAAAATGATGTCATGAACGCATGACTTTTTTCTGTCCCTTTTCTGTTTGCTTTTACATGATTTGCTCAGAGAAAACGAAAAACGAGGGAAAAAAGCAGTTGGACATTCAGGGGGTTTCTGTATTGTAAAGAATTAGAAAATATCTAATTGATTAAAAAAAACAAAAACAAACAAAACTAAAACAACGATATGTGAGGGACACTTTTAAAGGCAGAGGTTTGTTGTATTTGGTCTAATCATACCATTATAACATTTTTAAATAATTAAGCGGCCACACTGTAAAAAAAATTGTTGGTTTAATTTAAAAAAGCAAGTTACCTGGGTGTCTTAAAAGTTTGAGTTAATACAATGAGGGCGATTGGTTTAATCAACAGAAATTCAAAATATTATGTTATCTGAACCACATTAATTATTTAAGTTGATTTGACAAAAGAAAAAGTGTGATAAATTATGAATATATATATATATATATATATATATAAATTTAGAGAAAAATTGAAAATACTCTGGCCTTATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185633 lncRNA downstream 17497 7881819 ~ 7883093 (-) True G163385
TU185714 lncRNA downstream 38902 7859913 ~ 7861688 (-) True G163463
TU185708 lncRNA downstream 42650 7855627 ~ 7857940 (-) True G163459
TU185706 lncRNA downstream 47430 7852786 ~ 7853160 (-) True G163457
TU185702 lncRNA downstream 49418 7850958 ~ 7851172 (-) True G163453
TU185729 lncRNA upstream 109707 8011148 ~ 8011994 (-) True G163478
TU185730 lncRNA upstream 111613 8013054 ~ 8013290 (-) True G163479
TU185744 lncRNA upstream 254930 8156371 ~ 8156606 (-) True G163493
TU185646 lncRNA upstream 263656 8165097 ~ 8167093 (-) True G163398
TU185746 lncRNA upstream 267077 8168518 ~ 8168826 (-) True G163495
CI01000030_07889005_07897250.mRNA mRNA downstream 3340 7888331 ~ 7897250 (-) True CI01000030_07889005_07897250
CI01000030_07810359_07822361.mRNA mRNA downstream 78229 7810359 ~ 7822361 (-) True CI01000030_07810359_07822361
CI01000030_07802211_07804196.mRNA mRNA downstream 96367 7802049 ~ 7804223 (-) False CI01000030_07802211_07804196
CI01000030_07794056_07801708.mRNA mRNA downstream 98882 7793671 ~ 7801708 (-) True CI01000030_07794056_07801708
CI01000030_07788973_07791700.mRNA mRNA downstream 108392 7788808 ~ 7792198 (-) False CI01000030_07788973_07791700
CI01000030_07915089_07922551.mRNA mRNA upstream 13578 7915019 ~ 7922704 (-) True CI01000030_07915089_07922551
CI01000030_07957599_07964510.mRNA mRNA upstream 55882 7957323 ~ 7964510 (-) True CI01000030_07957599_07964510
CI01000030_07987094_07988489.mRNA mRNA upstream 85339 7986780 ~ 7988681 (-) True CI01000030_07987094_07988489
CI01000030_08064681_08066997.mRNA mRNA upstream 162793 8064234 ~ 8067042 (-) True CI01000030_08064681_08066997
CI01000030_08096309_08096995.mRNA mRNA upstream 193402 8094843 ~ 8096995 (-) True CI01000030_08096309_08096995
TU185614 other downstream 108208 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 162586 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 750446 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 974933 6924483 ~ 6925657 (-) True G163065
TU183403 other downstream 1148179 6743298 ~ 6745350 (-) True G161515
TU185749 other upstream 290478 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 1031972 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 1385765 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 1573747 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 2214074 10121592 ~ 10121720 (-) True G163717

Expression Profile