RNA id: TU186385


Basic Information

Item Value
RNA id TU186385
length 332
RNA type TUCP
GC content 0.48
exon number 2
gene id G164071
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9475188 ~ 9476264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTTTGAGAGTACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAACTGGCCAGCAAACTCGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCATGCCGCATTGCTGCAGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186363 lncRNA downstream 32168 9442585 ~ 9443020 (-) True G164053
TU186352 lncRNA downstream 70729 9404246 ~ 9404459 (-) True G164042
TU186345 lncRNA downstream 114101 9360803 ~ 9361087 (-) True G164035
TU186344 lncRNA downstream 114457 9360435 ~ 9360731 (-) True G164034
TU186063 lncRNA downstream 118216 9356535 ~ 9356972 (-) True G163778
TU186387 lncRNA upstream 10202 9486466 ~ 9487179 (-) True G164072
TU186392 lncRNA upstream 17062 9493326 ~ 9493603 (-) True G164074
TU186394 lncRNA upstream 23153 9499417 ~ 9499873 (-) True G164076
TU186410 lncRNA upstream 41275 9517539 ~ 9539196 (-) True G164084
TU186423 lncRNA upstream 64503 9540767 ~ 9541062 (-) True G164092
CI01000030_09448873_09453673.mRNA mRNA downstream 21096 9448772 ~ 9454092 (-) True CI01000030_09448873_09453673
CI01000030_09433282_09440636.mRNA mRNA downstream 34100 9432916 ~ 9441088 (-) True CI01000030_09433282_09440636
CI01000030_09382055_09418356.mRNA mRNA downstream 56141 9381984 ~ 9419047 (-) True CI01000030_09382055_09418356
CI01000030_09277337_09294501.mRNA mRNA downstream 180386 9276431 ~ 9294802 (-) False CI01000030_09277337_09294501
CI01000030_09253701_09256358.mRNA mRNA downstream 217398 9252115 ~ 9257790 (-) True CI01000030_09253701_09256358
CI01000030_09500443_09502785.mRNA mRNA upstream 23999 9500263 ~ 9502862 (-) True CI01000030_09500443_09502785
CI01000030_09561245_09573575.mRNA mRNA upstream 84898 9561162 ~ 9574107 (-) True CI01000030_09561245_09573575
CI01000030_09579086_09594020.mRNA mRNA upstream 102800 9579064 ~ 9594113 (-) True CI01000030_09579086_09594020
CI01000030_09639163_09647509.mRNA mRNA upstream 161878 9638142 ~ 9647564 (-) True CI01000030_09639163_09647509
CI01000030_09683547_09689191.mRNA mRNA upstream 206035 9682299 ~ 9689387 (-) True CI01000030_09683547_09689191
TU185995 other downstream 173039 9287206 ~ 9302149 (-) True G163710
TU186160 other downstream 541206 8933413 ~ 8933982 (-) True G163873
TU185749 other downstream 1282702 8192404 ~ 8192486 (-) True G163498
TU185614 other downstream 1682806 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 1737184 7737975 ~ 7738004 (-) True G163364
TU186002 other upstream 639251 10121592 ~ 10121720 (-) True G163717
TU186048 other upstream 809465 10318595 ~ 10320105 (-) True CI01000030_10313822_10320039
TU186031 other upstream 871096 10392048 ~ 10392179 (-) True CI01000030_10374567_10392087
TU186081 other upstream 889153 10365417 ~ 10366355 (-) True CI01000030_10343879_10366274
TU186808 other upstream 2018074 11512598 ~ 11512682 (-) True G164443

Expression Profile