RNA id: TU185697


Basic Information

Item Value
RNA id TU185697
length 457
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G163448
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7843812 ~ 7844268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTTCCAAGGTTGAAACACTGATTGAGCTATTACAAGAGACATGATATGGATTTCGGTAAGTTGTACTGTATATTTTAACATACCTTCAGATGTTTAGTCATGTTTATTTCGCGCTGTAACTGGTATTAAAGCGGAGAGGATGTTCACATGCGTTCCGTGCTGCCGCTTCTCTTTAACTGAGGCGCTAAAGCGATCTGTCACGTCACATTAAACAGCGCCAAAACAATATTTATTTTTTTAATCTCATAATAAGATGGACGTCATTTGAAATCTGAGACTTTGCTTCATATCAAAAGTAACAAAGCACAAAGATTATTGCGATTTATTGGATGGGAGGCGCGCTACATGCTCTGTTCATTCATCAACTGAAAACGGACTAGACTAATCGATTCTTGGGATTTAAGAATCGATATCGGTTCGTAAAAATGAGAATCGATTAAAATCGAATATTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185694 lncRNA downstream 13205 7829691 ~ 7830607 (-) True G163445
TU185693 lncRNA downstream 13650 7829691 ~ 7830162 (-) False G163445
TU185691 lncRNA downstream 41233 7802132 ~ 7802579 (-) True CI01000030_07802211_07804196
TU185687 lncRNA downstream 62260 7781244 ~ 7781552 (-) True G163439
TU185683 lncRNA downstream 116409 7727193 ~ 7727403 (-) True G163435
TU185698 lncRNA upstream 752 7845020 ~ 7845475 (-) True G163449
TU185700 lncRNA upstream 4993 7849261 ~ 7849617 (-) True G163451
TU185702 lncRNA upstream 6690 7850958 ~ 7851172 (-) True G163453
TU185706 lncRNA upstream 8518 7852786 ~ 7853160 (-) True G163457
TU185708 lncRNA upstream 11359 7855627 ~ 7857940 (-) True G163459
CI01000030_07810359_07822361.mRNA mRNA downstream 21451 7810359 ~ 7822361 (-) True CI01000030_07810359_07822361
CI01000030_07802211_07804196.mRNA mRNA downstream 39589 7802049 ~ 7804223 (-) False CI01000030_07802211_07804196
CI01000030_07794056_07801708.mRNA mRNA downstream 42104 7793671 ~ 7801708 (-) True CI01000030_07794056_07801708
CI01000030_07788973_07791700.mRNA mRNA downstream 51614 7788808 ~ 7792198 (-) False CI01000030_07788973_07791700
CI01000030_07769918_07776928.mRNA mRNA downstream 66884 7768948 ~ 7776928 (-) True CI01000030_07769918_07776928
CI01000030_07889005_07897250.mRNA mRNA upstream 44063 7888331 ~ 7897250 (-) True CI01000030_07889005_07897250
CI01000030_07901178_07901441.mRNA mRNA upstream 56322 7900590 ~ 7901441 (-) True CI01000030_07901178_07901441
CI01000030_07915089_07922551.mRNA mRNA upstream 70751 7915019 ~ 7922704 (-) True CI01000030_07915089_07922551
CI01000030_07957599_07964510.mRNA mRNA upstream 113055 7957323 ~ 7964510 (-) True CI01000030_07957599_07964510
CI01000030_07987094_07988489.mRNA mRNA upstream 142512 7986780 ~ 7988681 (-) True CI01000030_07987094_07988489
TU185614 other downstream 51430 7792243 ~ 7792382 (-) True G163366
TU185612 other downstream 105808 7737975 ~ 7738004 (-) True G163364
TU185332 other downstream 693668 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 918155 6924483 ~ 6925657 (-) True G163065
TU183403 other downstream 1091401 6743298 ~ 6745350 (-) True G161515
TU185749 other upstream 347651 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 1089145 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 1442938 9287206 ~ 9302149 (-) True G163710
TU186385 other upstream 1630920 9475188 ~ 9476264 (-) True G164071
TU186002 other upstream 2271247 10121592 ~ 10121720 (-) True G163717

Expression Profile