RNA id: CI01000030_07726597_07733277.mRNA


Basic Information

Item Value
RNA id CI01000030_07726597_07733277.mRNA
length 3887
RNA type mRNA
GC content 0.44
exon number 14
gene id CI01000030_07726597_07733277
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7726389 ~ 7734589 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTTGCAGCATTTTTCGCTGGGTAGGCTTTTAGTTCGGACCTAAGAAATTTGAAACTATTGTCAATATAAGTTGTTGGTTTTCTTTTGGATAGTTTTTATTTATTTATTTAACCCCTCCCAAAAACAACAGTCTGTTGTTTCTTCAAATCCCTTAAATAATTTTGTGAGAAATAATTGAGGATTTTGTTTGAAAAAAAAAAAAAAAAGTTTGCAGCATCGGCCAATGAAAAACCCCGCCCTCACCTGCGTAAAGCCACGCCCACATGTACCCTACCGCATAACAGCGCTGCTGAATTCTATACAGTCTCCAAACGTGTCGTGCGGTTTATTCGGACGTCAATGTAAAGATCAGATGCCTCAGTGACCAAATGCTGTCTGAAACGGTGAGTAACCATATATTCTATTCTGTTCGTCCTAGAATTGTGCCAGAAGTTATTACACAGTTTTATTACACATCTGTCTCGTCAGAAAAGTATTTGAACTGTTTGAATTGATTTTTTAATGTGTCAAAAACGAAAATAATATTTTATTGCATTATTTAATAGTATTATTTGTTTTATTATATTATTTTGTTATAGCCATTTTATATTTGATACTGTTGCAGTGCATTAATAAACCATAATAATTTAGCAAAATAAGTTTTAATTGGCATATATAGTAAGTATACTCCAACTGTTTTAGCATGGATGTTTGTGACATGAAATAACATTATATATTATAAACTGCTTGTTATTTTATACATTTTATTTTATTATATGTGAGTTATAATAGGAATATATTGTTTTGTTGTGCCACATAGTATTCCCAAAACTGCCATTTTATTTGATACCTTTGCATTGTTGTTGGCAAGACTGTAAATAATAGTTTTGCACTTCAAGTTTTAATTGCCATTTATCGTCTGTACTCCAAGTACATTGTTTGTTTGTATTTTTTTGATGAGCATATTTGTAATCAGAGAGTTGTTGTGGCATTTAAAAGCCTTAAGTGAAAAGTAACTATATCCATACTCTCTGGAACATCAGGCTTCATATTTCCGTCATATAACATCTCAGAATTGACAGAGGTTTGTTTGGGTTTCTCTGAACCACTCCTAGTATTGTCCCATTCTATGGCCTGTGAAATAATACTTTGTCATCCCACGAGATGATTTTCACTCTTGATACCCAAGGGAAACGCTAATACTTTTGATATCTTAAAAACCCAATCCTGTTTTTACCTGGTCATCTGTCTGTATTTCTTACCTCCATGTGTTCTTGTGTTTTACAGTTTGAATGTCCAGGTTGTGTTGCAGGTCTTTGTATAGACTGAAATGGAGAAGAAAGACTTGAATAAGTGGCCCGAGGGTGATTCACGGCCAGCTTACCTCTCCACTTGCAAATGTATGACATTAGCTGCAATACTGATTCTTCTCATCATTGGGGCTGCTGTGGGTTTTATGACAGCCTACTTAATACAAGAGGAACATTATTTCATGGAGACAGTGGAATTGCAAGGGCTCAGTTATGATTCAGACCTGCAAGATAAAACATCAGGATTCTCTGTAGTTCTGACCGCGACTCTGAAAGCAAACATCAGGAATATCTTTGCCGCCTCTGCAGTGGCAAATCATTTTATTGACTGCCAGATAGTTGCATATGGGAATATCAACACAAATGTGATGACCACTCTTCGTTTGGTCTTCCGGGTTTCTCAAGTCCAGGGGTACACGGAGAACTTTGTCCAAGACCTCCTTCGCACTGGATTGAAGGCCATGTTGAACGGGAAACCCATCATTGTCCCAGAATACGGAGAGATCAGTAGCATCATCCTTCTTGGGGCAAGTGGAAAGTCATTCTATGAGATTGGGAATGACATAAGTAAATGTCCTGAGAACACGTTCACTTGTGACAATGGCGAGTGCATCACAAAGCCAAATCCAGAATGCGACTTTATAACCGATTGTGCTGATGGCTCAGATGAAGCCTTTTGCTCCTGTGGAACACGTCCTGCCATGGCTAACCGTGTTGTGGGTGGTGAAAACACCCGTCACGGGGAGCTACCCTGGCAGGTCAGTCTCAGACTACGTGGCCGTCATACCTGTGGCGCATCCATTGTCAACAATCGCTGGCTTGTCAGTGCCGCTCATTGTTTTGAAACAGAAAACAACCCAAAAGACTGGACGGCTCTTGTGGGAGCCAATCTAGTCAGTGGGGAGGAGGGAGAAGCCACCATAATAAACATCAAGTCCCTGGTTGTCTCTCCGGTCTATGATCCCATGACCACTGACAGTGATGTGACCGTACTGGAGTTGGAAACACCCTTGACATTTAGCCCTTATGTTCAGCCAGTCTGTATTCCATCATCCTCTCACATTTTCAGTCCTGGGCAGAACTGCATCGTCTCTGGTTGGGGAGCTCTTAATCAGTACACCAGTGATGTGCCTTCTACACTACAGAAGGCAATCGTGAAGATTATTGACTCGAAAGTGTGCAACAAGTCATCTGTATACAGAGGTGCCCTCACCCAAAATATGATGTGTGCTGGTTTCCTTCAAGGGAAGGTGGACTCTTGTCAGGGAGACTCTGGGGGCCCTCTGGTATGTGAGGTGGCTCCTGGGCGCTTTTTCCTAGCGGGCGTGGTGAGCTGGGGTGTGGGATGCGCACAGATCAACAAGCCTGGGGTCTATTCCCGCGTCACCAAACTCCGCAACTGGATTCTGGGCTACACCAATACGGCACCAACAATCCAAGTCGCCCCCACTGTCCCTAGTGTCACGACCACTGCGGCTCATCTTGTTAAAGCTATGAGCTCGTCCTCTGAGCTCGCCAATGATGAATATAATCCTGCTCCTGGGAACTGCAGTGGTAATTATAACTGTGGCGGAAACAAGTGCATCAGCAAGATAAACCCAGAATGTGACAGAGTCGTTGACTGCCCTAATGAGACTGATGAGAAAAACTGTGACTGTGGGAATCGTCCAGCCGTGGGACAGGAGAGGATTATCGGTGGTGTCTCTGCCCGGAGAGGTGAATGGCCATGGGTGGGCAGTCTGCAGTACCAACGCACTCACCGCTGTGGAGCTACGCTCATCCACTGCAAATGGCTCCTGACTGCTGCTCACTGCTTCAGAGGTGAGCTGAACCCTGCCAGTTGGACAGTAAGTCTTGGGTCAGTCATTTGGTCTGGACTGGGTGCTCTGGTTATTCCAGTGCAAAGGATCATCCCTCATCCTGCTTTCAATAGCAGCACCATGGATTTTGATGTGGCCTTGGTGGAGCTCTCCATCCCCGCCCCCAAGTCCTACACCATCCAGACTGTGTGTTTGCCTTCTCCCTGGCATAGCTTCATCAAAACTATGGAATGCTACATCATTGGATGGGGTGCTGTGAAGGAGGACGGTATGATAACTAATTTGCTGCAAAAAGCACAGGTTAGTGTCATCGATCAGTGGGACTGCCAGCGAGCTTATGGTGCTGAACTTACTGACAACATGATGTGTGCTGGCTCGATGGAAGGGGACAGGGACACATGTTTGGGAGACTCAGGGGGCCCTGTGACGTGCCGTGAACCCCAGGGCCGTTGGTTCCTGGCCGGGGTGACCAGCTGGGGTCACGGCTGTGGGCGAATTGGCTTCCCGGGAGTTTACACGCGGGTCACAGCTGTCAGAGAGTGGATATCTATATACCTCCCTTTTTAAATATAAGATCCAGAAATGTCCTTCACCATCTCACAACTGATGTGCAGTCGTGTCTCTCAACTGAAGATGCATGAAACTCAAATGGATGACTTTACCAGCATGTTCAAACTGTACTGTCAAAATATTTATTTTTGGTATTTATTAACAATGCATTCTGGTGTACGACACACTAGCCCTTGATGTGCTATTTGCCATTTAGGAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185681 lncRNA downstream 22680 7703408 ~ 7703709 (-) True G163433
TU185664 lncRNA downstream 70775 7655039 ~ 7655614 (-) True G163416
TU185663 lncRNA downstream 73411 7652602 ~ 7652978 (-) True G163415
TU185407 lncRNA downstream 74504 7649961 ~ 7651885 (-) True G163181
TU185406 lncRNA downstream 74580 7649830 ~ 7651809 (-) False G163181
TU185687 lncRNA upstream 46655 7781244 ~ 7781552 (-) True G163439
TU185691 lncRNA upstream 67543 7802132 ~ 7802579 (-) True CI01000030_07802211_07804196
TU185693 lncRNA upstream 95102 7829691 ~ 7830162 (-) False G163445
TU185694 lncRNA upstream 95102 7829691 ~ 7830607 (-) True G163445
TU185697 lncRNA upstream 109223 7843812 ~ 7844268 (-) True G163448
CI01000030_07716863_07718632.mRNA mRNA downstream 7270 7716717 ~ 7719119 (-) True CI01000030_07716863_07718632
CI01000030_07710486_07714016.mRNA mRNA downstream 12238 7709796 ~ 7714151 (-) True CI01000030_07710486_07714016
CI01000030_07548087_07549591.mRNA mRNA downstream 176443 7547512 ~ 7549946 (-) True CI01000030_07548087_07549591
CI01000030_07494612_07513546.mRNA mRNA downstream 212211 7493560 ~ 7514178 (-) False CI01000030_07494612_07513546
CI01000030_07438282_07471671.mRNA mRNA downstream 252592 7437214 ~ 7473797 (-) True CI01000030_07438282_07471671
CI01000030_07736031_07737720.mRNA mRNA upstream 1157 7735746 ~ 7737720 (-) False CI01000030_07736031_07737720
CI01000030_07749038_07754607.mRNA mRNA upstream 14197 7748786 ~ 7754607 (-) True CI01000030_07749038_07754607
CI01000030_07761302_07764226.mRNA mRNA upstream 26713 7761302 ~ 7764226 (-) True CI01000030_07761302_07764226
CI01000030_07769918_07776928.mRNA mRNA upstream 34359 7768948 ~ 7776928 (-) True CI01000030_07769918_07776928
CI01000030_07788973_07791700.mRNA mRNA upstream 54219 7788808 ~ 7792198 (-) False CI01000030_07788973_07791700
TU185332 other downstream 576245 7149474 ~ 7150144 (-) True G163139
TU185223 other downstream 800732 6924483 ~ 6925657 (-) True G163065
TU183403 other downstream 973978 6743298 ~ 6745350 (-) True G161515
TU183401 other downstream 974073 6743258 ~ 6745350 (-) False G161515
TU185612 other upstream 847 7737975 ~ 7738004 (-) True G163364
TU185614 other upstream 54208 7792243 ~ 7792382 (-) True G163366
TU185749 other upstream 457330 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 1198824 8933413 ~ 8933982 (-) True G163873
TU185995 other upstream 1552617 9287206 ~ 9302149 (-) True G163710

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040236 True 2367 mRNA 0.50 14 NC_007133.7 10759113 ~ 10768823 (+)