RNA id: CI01000030_07002565_07003644.mRNA



Basic Information


Item Value
RNA id CI01000030_07002565_07003644.mRNA
length 1171
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000030_07002565_07003644
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 7002235 ~ 7003945 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCTTCTCTGCCATTCTTTATTTAATTCGTTCCGAATTGTAGCTTTTATCTCACCTTTCCTCATTAACACTTGAATATGAAAACCATCACATAGTATTATGTAGGTGAGATACTGCAGTTGTTCTCTGCTGCCCTCAAAAGGCTGCATATGGTAGTTTCCCCACACACTTTACCAAGGTCCAATCACTATTTTTTTTTTCTTTCCTGTCTTTACTTCAAAACTGCAGTAAACTTCATTTTAAATGTTGTGTGGAGGGAAGCAGATTCATACTGAAGTGTTTTAATTACAATTCACAACAACATGAAGATCATTCAGCTTCAGCTCTATGTCTTAATCTGTTGTCAAGCTGCAGTAGCAGATCAACTAACTGATTTGGGATCAAATGTGACCATAAACTGTGATCTTGATGAAAATGATGTTTACTGGATTTTACTGAAAACACCAGATCCTCCAACAGTGATTCTACGATCATTCTCAACACCATCATCTCCTTTTTACCCTAATAATGCATTCAGAAAGAAATATTCAGTGCAATTTAAACATTGTCTAGTTATAAATAATGTGACTGCTGATGAATTAGGAGTTTATTACTGTATGAACACACGAACACCTCCAAAATTCAGCAACAGCACCAGACTGTACTTCACCGCGCTGGAGTTTATTGATCAGAATCAGAAACAATATCAGATTATCATCATCATATCTGCTCTGATGATCGGGCTTCTGCTCATTGTGCTGATCGTGTTTGCTGTTGGAAAAACAGATTGGTTGGAAAAACACATTGATGATCTTGATCTACTGCAGACACGAGTGATATATCAGCTTCAAGGCCAAAACTGATTAATATTACAATAAGTTAAATTTATGTGAAACCATCAGTTCTGTGATATACTGTATGTTCTTTAAAATAACATGCCATTTATTGTGTGATTAATATACTTACCCCCGGTTTCACAGACAAGGTTTAGACCTAGACTAAAATACATGTTTGAGCTGTTTTAACTGAAAACAACTTGTACTGGCAGATCTTAAAATATGTCACAGTCATTGTTTTGTCTCAAAATGCACACCAGTTATGTTTTTTCTAGAGCACATTTATAAAAGCTACTTATATGCCCTAAATAAAATAAGGCCGGGCCTCTGAAACCGGGTCTTAATGTCAAGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU185244 lncRNA downstream 10200 6991647 ~ 6992035 (-) True G163085
TU185242 lncRNA downstream 12978 6989016 ~ 6989257 (-) True G163083
TU185241 lncRNA downstream 13416 6988431 ~ 6988819 (-) True G163082
TU185240 lncRNA downstream 18540 6983305 ~ 6983695 (-) True CI01000030_06940324_06983295
TU185235 lncRNA downstream 32583 6969403 ~ 6969652 (-) True G163077
TU185258 lncRNA upstream 10557 7014502 ~ 7014724 (-) True G163099
TU185261 lncRNA upstream 16058 7020003 ~ 7020262 (-) True G163102
TU185262 lncRNA upstream 16418 7020363 ~ 7020637 (-) True G163103
TU185267 lncRNA upstream 33803 7037748 ~ 7038212 (-) True G163108
TU185278 lncRNA upstream 63403 7067348 ~ 7084578 (-) True G163118
CI01000030_06985089_06988057.mRNA mRNA downstream 14131 6984257 ~ 6988104 (-) True CI01000030_06985089_06988057
CI01000030_06940324_06983295.mRNA mRNA downstream 18272 6940224 ~ 6983963 (-) False CI01000030_06940324_06983295
CI01000030_06919935_06930161.mRNA mRNA downstream 71907 6919413 ~ 6930328 (-) True CI01000030_06919935_06930161
CI01000030_06886173_06894325.mRNA mRNA downstream 107806 6886157 ~ 6894429 (-) True CI01000030_06886173_06894325
CI01000030_06841490_06848643.mRNA mRNA downstream 153576 6841072 ~ 6848659 (-) False CI01000030_06841490_06848643
CI01000030_07008035_07011384.mRNA mRNA upstream 3888 7007833 ~ 7011384 (-) True CI01000030_07008035_07011384
CI01000030_07072355_07077515.mRNA mRNA upstream 67936 7071881 ~ 7077515 (-) True CI01000030_07072355_07077515
CI01000030_07118097_07122890.mRNA mRNA upstream 114152 7118097 ~ 7122980 (-) True CI01000030_07118097_07122890
CI01000030_07154555_07155973.mRNA mRNA upstream 150610 7154555 ~ 7155973 (-) False CI01000030_07154555_07155973
CI01000030_07158026_07159540.mRNA mRNA upstream 153750 7157695 ~ 7159540 (-) True CI01000030_07158026_07159540
TU185223 other downstream 76578 6924483 ~ 6925657 (-) True G163065
TU183403 other downstream 249824 6743298 ~ 6745350 (-) True G161515
TU183401 other downstream 249919 6743258 ~ 6745350 (-) False G161515
TU183402 other downstream 249919 6743298 ~ 6745350 (-) False G161515
TU183395 other downstream 297490 6701731 ~ 6704145 (-) True G161511
TU185332 other upstream 145529 7149474 ~ 7150144 (-) True G163139
TU185612 other upstream 731491 7737975 ~ 7738004 (-) True G163364
TU185614 other upstream 784852 7792243 ~ 7792382 (-) True G163366
TU185749 other upstream 1187974 8192404 ~ 8192486 (-) True G163498
TU186160 other upstream 1929468 8933413 ~ 8933982 (-) True G163873

Expression Profile