RNA id: TU183402



Basic Information


Item Value
RNA id TU183402
length 2053
RNA type TUCP
GC content 0.40
exon number 1
gene id G161515
representative False

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6743258 ~ 6745350 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCCACACTGAGCTCTGGAAGCTAGCTGTGACGGACAAAACACACACACACACACACTTGGCATGGATAGCAAAGTTCTAGCGCTGGTGGCCCTGCTGACGCTCGCCATATGGAGCCCAGAGACGGACGCTAAACCCATCAGTCTGGTGGAGAGATGTTGGTGCCGGTCCACTCTCAACACCGTCCCGCAGAGGAGCATCCGTGAGATTAAGTTCCTCCACACACCCAGCTGCCCGTTCCAAGTCATTGCCAAGCTGAAGAACAACAGAGAGGTCTGCATCAACCCCAAGACCAAATGGCTTCAGCAGTATCTAAAGAATGCCATTAACAAAATAAAGAAGTCAAAGAAACGTTCAGAGTAAACGCATGAGGATGTGCGGGGAGGACCACAGTGCATCTCTGACCTCTAAAGAGGCACACGTCCTCTTCTCTTGCTTTCTTAGATCACTCTTCCTCTTTTTGGACTGCTTGCACAAACAGCACTTCACCTAAACCTGCCTCTCAAGCACCCAGACAGCCTGCAGCTCACCAAAACACAACCAAACACCTTCATCCTGACGCACTGCTACTGCTGGCTGTGACTGTTTACTGGTGCACGAGTGTGTGTGAGAGTGAATGAAGCGATTGAATGCGACCTTGAACGTGCGAATGGGAAGGCAAGAGAAATATTTACAGGTTTTCCGCAACTTAAAAGGCAGTAAAAATGAGAGTTTGTGGATTTGTGTCATAGCTGTGAAGGATGTTTAACCTTTGGGATAGTTTGGGATTAATAAGGGATGTAAGCAAGTGAAAAGAAGCAGAAAGTTAAACTTGCCCCTGTTCAAGCTCACTTTTGCTGTAGTCTCGGTATTTAAAAGCTCATCAGCACACATGAATGATCTAGCACACTAACGCTAGCCCTGTTCCAAAACCTAATGAGCCGCCTACCTGGACACCTAATGCAAAAACGACAAAACAAACTGCCTTTTAAAATTTACAGCAGTATCAGCTGTTTTTATCAAATTAAGCAATCCCAGAATGCATTGCGACAAGCTCTATTCAAAATCCAAGATGGCAGATGTGAAAAGCAAATCATAAGTATACTCACATTTTATTCAGTACTAAATAAAAGGTTAAAAATTGACTTTTTTTCCCTGTATTTCTATGTATTTTCTTAAAAACTGCATAATTAGCTTAGCAACATGCTAACGTCAAACTGTTTGGAATCAATTGTGAGATTAACATTTTTGGGGAGTGTTTCAAATCAATCACTTACAAAGTTTCATAACAGTTACAGAGCGGCCTTAGGAGCCATTTACACAAGACCGTTTTCAACAAAAAACATTTTATGCGTTTTGGTTATTTACGCGACAATTGCGGCTTAAAAGCGCAAACCTTTAAAAACGTGTTTCAAAGTGCACGTTTTTGAAAACAATACCGTTATCGTCTCACAAATTTATGAAAACGGTGAAGTCGTGTGCATGCGTATTACTTTTTAGTCTATAGGTGCGTAGTGTATCTTTACAAAGTGACATCGCCAACTACTGGCCTGGCATGAATAATACAGCATTTTAGTACTTTTCGCAAATCTGTGTGAACGAGGATAGCTTTGACAACATACGTGAAAAATGAAAAAGAAAACCTTTCCGTTTTTAGCACATCATTGTCGTAGCCTTAGAAGAGAGTAGGCGGTATGTGTAGTGCACTTAGCAGTGCACTATCTAGGCAAGAGATAAAAGGTTTTGGAACAGAGACACGTTTGACTAAGGGCTGCTACTACAGGAAGCAGAATCATAGTTTCCTGCCTTTCTTTTCCTCTCTGCTACCTGTGTGTAGCAAATGCCAGACACTGAAACCCAAGAAATATGCCATTTAGAGCAGATGTGCTATTTGTTTAAAGCAGGTGTTGTTAATGTAATCACGCCATGGCAGCTTAAAACTTCTGCTCATGTGTATCGAGCGATATTCCGTGACTCAGGCCTTAATTAACAGCATTTGCATACAGATCTTTACTGTCTAGTGGCCTAATTGTGTGTCATACTGGTTGTTACTTGGATCCAACAAGAACAACCAACATGTAAATATTCTCAAGCACTAAATGGCTGTCAGTAAATGGGTTGAACAGGGACCAAAACTGAATAAATGCAAGCAATTTTGTAGACTAAATTAATATTACTTTATGTATTCCATATGTATCATGTTTTGTTTTTATCCACAAAATTAAGGGATATGACTGTGATTTTGGTTTCCATGACATTAACACATTTATCTAACACACATTGTTTCTGTTCTGATAATGTTTTGACTCAATTGCCCAATTGCTGTAACGTTTTTGAGCCACTTTAAAAATAAGGAGTTTGTAATGTAATGATTTATTTTTGTATTGATCAATATGAATAAAAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU183407 lncRNA downstream 143441 6594369 ~ 6599857 (-) True G161519
TU183412 lncRNA downstream 188799 6551771 ~ 6554499 (-) True G161522
TU183271 lncRNA downstream 488559 6248834 ~ 6254739 (-) True G161399
TU183267 lncRNA downstream 497280 6245801 ~ 6246018 (-) True G161395
TU183266 lncRNA downstream 498598 6244454 ~ 6244700 (-) True G161394
TU185186 lncRNA upstream 89109 6841425 ~ 6841770 (-) True CI01000030_06841490_06848643
TU185195 lncRNA upstream 114769 6867085 ~ 6867895 (-) False G163043
TU185198 lncRNA upstream 114931 6867247 ~ 6867761 (-) True G163043
TU185211 lncRNA upstream 147628 6899944 ~ 6900921 (-) True G163053
TU185228 lncRNA upstream 191829 6944145 ~ 6944501 (-) True G163070
CI01000030_06715403_06717267.mRNA mRNA downstream 25572 6714653 ~ 6717726 (-) True CI01000030_06715403_06717267
CI01000030_06705681_06711246.mRNA mRNA downstream 32052 6705424 ~ 6711246 (-) True CI01000030_06705681_06711246
CI01000030_06701334_06704398.mRNA mRNA downstream 38900 6701087 ~ 6704398 (-) False CI01000030_06701334_06704398
CI01000030_06645888_06646573.mRNA mRNA downstream 95842 6645802 ~ 6647456 (-) True CI01000030_06645888_06646573
CI01000030_06602837_06605662.mRNA mRNA downstream 137606 6602074 ~ 6605692 (-) True CI01000030_06602837_06605662
CI01000030_06810754_06819241.mRNA mRNA upstream 58277 6810593 ~ 6819241 (-) True CI01000030_06810754_06819241
CI01000030_06825126_06834282.mRNA mRNA upstream 72757 6825073 ~ 6835144 (-) True CI01000030_06825126_06834282
CI01000030_06837243_06838315.mRNA mRNA upstream 84794 6837110 ~ 6838523 (-) True CI01000030_06837243_06838315
CI01000030_06841490_06848643.mRNA mRNA upstream 88756 6841072 ~ 6848659 (-) False CI01000030_06841490_06848643
CI01000030_06886173_06894325.mRNA mRNA upstream 133841 6886157 ~ 6894429 (-) True CI01000030_06886173_06894325
TU183395 other downstream 38553 6701731 ~ 6704145 (-) True G161511
TU183215 other downstream 604892 6133375 ~ 6133500 (-) True G161355
TU182698 other downstream 942872 5797297 ~ 5800426 (-) True G160949
TU182441 other downstream 1231224 5456960 ~ 5512074 (-) True G160712
TU182444 other downstream 1319785 5419119 ~ 5423513 (-) True G160713
TU185223 other upstream 172167 6924483 ~ 6925657 (-) True G163065
TU185332 other upstream 397158 7149474 ~ 7150144 (-) True G163139
TU185612 other upstream 983120 7737975 ~ 7738004 (-) True G163364
TU185614 other upstream 1036481 7792243 ~ 7792382 (-) True G163366
TU185749 other upstream 1439603 8192404 ~ 8192486 (-) True G163498

Expression Profile