RNA id: CI01000030_06701334_06704398.mRNA


Basic Information

Item Value
RNA id CI01000030_06701334_06704398.mRNA
length 595
RNA type mRNA
GC content 0.47
exon number 3
gene id CI01000030_06701334_06704398
representative False

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6701055 ~ 6704745 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTTCTTCAGAAACCGTCTCTCACATGATGTACACAATAACCAGAGGTCCCAGCAAACTTGTTACACAACGGAGAACAGGTATAGTTTTGAACAGCATGCACAGTCTATAATACATATCAGCGCAATCGCCATCATTGAAAGTTCACCAGCACCGAAGATTGTATTTAACCGGCTGAACGGAAAGCGGTACCACAGATCCACCTCTCCAAAAGCTGCCAGTACTACTGAAGGATTCACCCCAGCACATGAGGAGAATGTTCGATTTGTTTATGAGGATTTTGTGCCTATTGATCTTGAGGAGTGGTGGGCCCAGCGTTTCCTGGCCAACATTGTTAACCTGTCATGACAGGTGCATGATGGGGCATGAGATGTGGCTGAGTGGTCCTGACTGAGGCAGTGCAGCCTGACTCTCCTGATGAGCTCAGGTGATAATGTGAGAGATTCGCACGCTGTGTGAATTCAGCCCTTCCTGTGGAACTGTTTGCCCAGCCGGACACAGATTCTCTCTCGTGCACACGGAAGATGATCAGAGATTTTTCTTTCTTTGTTAGAATGTGAGATGTCTGTTTTTCTCCACAGATCTTTGCAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183407 lncRNA downstream 101230 6594369 ~ 6599857 (-) True G161519
TU183412 lncRNA downstream 146588 6551771 ~ 6554499 (-) True G161522
TU183271 lncRNA downstream 446348 6248834 ~ 6254739 (-) True G161399
TU183267 lncRNA downstream 455069 6245801 ~ 6246018 (-) True G161395
TU183266 lncRNA downstream 456387 6244454 ~ 6244700 (-) True G161394
TU185186 lncRNA upstream 137027 6841425 ~ 6841770 (-) True CI01000030_06841490_06848643
TU185195 lncRNA upstream 162687 6867085 ~ 6867895 (-) False G163043
TU185198 lncRNA upstream 162849 6867247 ~ 6867761 (-) True G163043
TU185211 lncRNA upstream 195546 6899944 ~ 6900921 (-) True G163053
TU185228 lncRNA upstream 239747 6944145 ~ 6944501 (-) True G163070
CI01000030_06645888_06646573.mRNA mRNA downstream 53631 6645802 ~ 6647456 (-) True CI01000030_06645888_06646573
CI01000030_06602837_06605662.mRNA mRNA downstream 95395 6602074 ~ 6605692 (-) True CI01000030_06602837_06605662
CI01000030_06570135_06578090.mRNA mRNA downstream 122997 6570022 ~ 6578090 (-) True CI01000030_06570135_06578090
CI01000030_06560646_06561937.mRNA mRNA downstream 139150 6559844 ~ 6561937 (-) True CI01000030_06560646_06561937
CI01000030_06558263_06559216.mRNA mRNA downstream 141603 6558075 ~ 6559484 (-) True CI01000030_06558263_06559216
CI01000030_06705681_06711246.mRNA mRNA upstream 1026 6705424 ~ 6711246 (-) True CI01000030_06705681_06711246
CI01000030_06715403_06717267.mRNA mRNA upstream 10255 6714653 ~ 6717726 (-) True CI01000030_06715403_06717267
CI01000030_06747047_06752255.mRNA mRNA upstream 42562 6746960 ~ 6752255 (-) False CI01000030_06747047_06752255
CI01000030_06810754_06819241.mRNA mRNA upstream 106195 6810593 ~ 6819241 (-) True CI01000030_06810754_06819241
CI01000030_06825126_06834282.mRNA mRNA upstream 120675 6825073 ~ 6835144 (-) True CI01000030_06825126_06834282
TU183215 other downstream 562681 6133375 ~ 6133500 (-) True G161355
TU182698 other downstream 900661 5797297 ~ 5800426 (-) True G160949
TU182441 other downstream 1189013 5456960 ~ 5512074 (-) True G160712
TU182444 other downstream 1277574 5419119 ~ 5423513 (-) True G160713
TU181890 other downstream 3231925 3466353 ~ 3469162 (-) True G160213
TU183401 other upstream 38860 6743258 ~ 6745350 (-) False G161515
TU183402 other upstream 38900 6743298 ~ 6745350 (-) False G161515
TU183403 other upstream 38900 6743298 ~ 6745350 (-) True G161515
TU185223 other upstream 220085 6924483 ~ 6925657 (-) True G163065
TU185332 other upstream 445076 7149474 ~ 7150144 (-) True G163139

Expression Profile