RNA id: TU181890


Basic Information

Item Value
RNA id TU181890
length 2254
RNA type TUCP
GC content 0.43
exon number 3
gene id G160213
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3466353 ~ 3469162 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATGTCATAATTCTGATTTACCAAAGCATTTGCAGCTTCCATAATTCCTTGAAGTACTTTGGAGTGACCCGTAAATAAATGTTAGTATACTAACAAAAAAGTGCCATGGTACTGCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTGCACTAGATTTTCCAGATGTTTAGCCAAACCTCACCCTCCCATGAGCCATTTGCTCTTTTTAAGGTATTTAGTGAAAAGCTGGCGGTGCACTTTGGCACGTTCCTGTGAGAAGGAACAACAAAAACAGCACATAAAAAAAGCTAATGGCTTCTTTATACGCACTGCCGACAAGGCTTTTCTTAATTGGTTAAGATTTGAGAACAGTCCCATTCCCACAACTTTTTGCCTGGAATTTCTTGTTCTTACCTTCTGTTTCACTTTTAAGCACAATTTACTCTTCAGATTAAAGTTCTGCTTCCGGTTTGAGTCCTAAATGTTCACCAGATATCTGGGACTGTTGCCAATTTCTGTCTTCCGATACAAATATGACCCTCATAGTAATGGAAAAATGCCTTGAAAACAAAATAATCCTCCAATCCGGGCTACTAATTAGGTGCTCTTGTGGCACAAGTACTTTTTGTTGGCTGTATGAGTTGGTAAAAAAAAGAAAAGAAATATTAATGCATTTTATTTTGGTATTTTTAGTCTATTTCAGGTTGTAGCTGGACCGGGGAGCAGCCGTCTGTGGGATTGAGTCATGTGACGATGTGATCTGGGTTAGCTGTGCGAAACGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGAGCCGGAGTTGTAGTGGTTGTACTTTCAGCACATCGCTCTCCCTCTTGGGTCTTGTCTGAAGGAGTCTGGCTTCAGGACAGGAGGAATGAGGGCTGAACGAGGGCCCTGGTGAAGACCCATATCTCCCGCCTGCCAATCTGTCTTCCTGTCCCCTTAGCTGGTGTGTGAGTGCAGGTGCGGCCCAGCGAGCTCTTTGCAAGAGAGAAAAGGTGGGGAGGATGTGGGAAAGACAAATAGTGGCCAGTGGTTTCTGAAGGTTTTTAGAGGCTGGAACCGGGATACTGGAGTAGACGAAGTGTCATACTGAAGCAGGGTAATTTTTTGGGTTAGGTTTGGGTATGATGTTACAAAATGTGTGACTGTTGAAATGTGTCAGTGGTAGATATTCACACAGCTATAGAGTGATGCAGGGATGATGTATTTTTGTAGGCCAAAACCAGAAGCATTTTAGCACTTCCGGTTCCATTGTCCTGAAGTCAATGGGTTTTTTGACATGTTATCACTGAGATACCAAGATTTTTATGACACTTTGCAGGTCCTAATTGTTTCCAACACGTGGCCTCTTCCGATCATGATGAAGAGGGAATAAAAGACACCCAGTGCTGCGGAGCTAAAAAGATTGTTTAGAATTAGAGAGATAAAGAATGACAAACAAAAAGAAGCGGGGTCTCTGAGGCAATGGATCCAGCGAAGACAGATCGAGCAATAAGGAGTGGGAGATTAGCACTAGCTAGAGGGAACGACTAAGAGGAAGGAGAGAGAAATCAGGAGGAGGCGAGGACATCGGGTCATGTCGACAGCTTGAAGCCATACTTTCAGCAGGGTGAGAGAGCAGAAGTTCATGTTAAAACCAGAGAGAAACCCCTCCTCTCTCTCATTGTATCTCTATCTCTCTCAATCCCTCTCTCCCTCACTCATTTAAAAGGCAGATCTGCCCTGGACACAGAAGGTAGGGCACTGCATTTGTCAGCGGGTATGAGGCCACCATCCGATTCGCTGTGGGTTGTGTCATTACGTTTGATTGACAGGAGCTGTGACAAGGGACTGTCCATGATCCCCGGAGGTTAGATTAGGGTAGCGAGGCCGCCAACACTCACGCGTGGATCATGTGAGGTCATGACTCTGAACATGAGCACACGGGGAAAACGCGTCGCAGGTGGTAGAGGTCATTTGCATTGAATGCTGATCCTGTATTTAAAGGAATATTCTGGGTCGGGAAATGAGATTTTATGAATAATAATAATAATAATAATAATAATAATAATAATAAAAAAAATGTTGATTGCGATTTAAAATGTGTGTGTGTTTTTTTTAAGCTCCAGGTTTGCTGTGGTTGTTTGTAGGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181879 lncRNA downstream 4157 3453210 ~ 3462196 (-) True G160208
TU181885 lncRNA downstream 13732 3441799 ~ 3452621 (-) True G160211
TU181893 lncRNA downstream 26114 3429257 ~ 3440239 (-) True G160215
TU181896 lncRNA downstream 39943 3420976 ~ 3426410 (-) True G160218
TU181874 lncRNA downstream 51011 3348204 ~ 3415342 (-) False G160207
TU181916 lncRNA upstream 32818 3501980 ~ 3502415 (-) True G160238
TU181917 lncRNA upstream 33349 3502511 ~ 3502887 (-) True G160239
TU181926 lncRNA upstream 39668 3508830 ~ 3509087 (-) True G160245
TU181971 lncRNA upstream 62079 3531241 ~ 3531473 (-) True G160289
TU181977 lncRNA upstream 71658 3540820 ~ 3541604 (-) True G160295
CI01000030_03273527_03314595.mRNA mRNA downstream 151758 3273527 ~ 3314595 (-) True CI01000030_03273527_03314595
CI01000030_03213584_03216600.mRNA mRNA downstream 249753 3213111 ~ 3216600 (-) True CI01000030_03213584_03216600
CI01000030_02978356_03013342.mRNA mRNA downstream 452846 2977774 ~ 3013507 (-) True CI01000030_02978356_03013342
CI01000030_02824217_02832330.mRNA mRNA downstream 633141 2823974 ~ 2833212 (-) True CI01000030_02824217_02832330
CI01000030_02785349_02803666.mRNA mRNA downstream 662687 2783629 ~ 2803666 (-) True CI01000030_02785349_02803666
CI01000030_03491770_03493119.mRNA mRNA upstream 20957 3490119 ~ 3493741 (-) False CI01000030_03491770_03493119
CI01000030_03545674_03546876.mRNA mRNA upstream 75980 3545142 ~ 3547053 (-) True CI01000030_03545674_03546876
CI01000030_03551269_03557640.mRNA mRNA upstream 81712 3550874 ~ 3558196 (-) True CI01000030_03551269_03557640
CI01000030_03571883_03576733.mRNA mRNA upstream 101863 3571025 ~ 3576907 (-) True CI01000030_03571883_03576733
CI01000030_03632671_03646877.mRNA mRNA upstream 163310 3632472 ~ 3646877 (-) True CI01000030_03632671_03646877
TU180496 other downstream 933789 2499584 ~ 2532564 (-) False G158980
TU180428 other downstream 1014635 2450849 ~ 2451718 (-) True G158914
TU180311 other downstream 1307062 2068000 ~ 2159291 (-) True G158802
TU180273 other downstream 1544222 1920258 ~ 1922131 (-) True G158780
TU182444 other upstream 1949957 5419119 ~ 5423513 (-) True G160713
TU182441 other upstream 1987798 5456960 ~ 5512074 (-) True G160712
TU182698 other upstream 2328135 5797297 ~ 5800426 (-) True G160949
TU183215 other upstream 2664213 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 3231893 6701731 ~ 6704145 (-) True G161511

Expression Profile