CI01000030_03571883_03576733 (BTBD1, BTBD2, BTBD2.S, BTBD2A)


Basic Information

Item Value
gene id CI01000030_03571883_03576733
gene name BTBD1, BTBD2, BTBD2.S, BTBD2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3571025 ~ 3576907 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03571883_03576733.mRNA
ACATCCTAAGCATGAAAACTAAAATTAATTACAGACAGGAAGGCCAAACTAATTAAAAAGGGGTTCGATGATGTTCAAGTCTCTTGTGGGAAGGCAGTCATTTGGCCAGTATTTCTGGTTATGCGCTGTTGTGTATGTTTATTCCAGCAAAGCCTGCAGTGTTCACCATCCAAGATGGCTGCGGGTGAAAGCAATAGCCGATCCTCATGTCTAAACTTGTCTAATTCGGGGCCACTTGGCAATGCACCGCCGAGCAACAGCGCCCATTCTTCACCCGCGAGCAACGGGGGATCCATGGGTGCAGTCGGGGGGATTAACCGGAGCGCGGGGAATTCGAACCCCCAATCAGGCCCGGAAAACGGCGGAGGCGCCGAGACTGCGGTGAGAAGCACGCCGAGCGCGCAGAACCCTTCCCGGCAGTCAGTCGGTCAGAGCGGAGCGACTTCAGGCGCTGCGTCAAACATGACGGCGACATCATCATCATCATCCTCGTCCGCGTCTACCGCATCCGCCGATGCGTCCGCCGCCGTCCCCTCGCTTCCCAGCAGCCCGGCTTCGGTTTTGGTTTATCGAGAGCCGGTCTACAACTGGCAAGCGACAAAAAGTACAGTGAAAGAAAGGTTTGCATTTTTGTTTAACAACGAAGTGCTAAGTGACGTCCATTTTTTGGTTGGGAAGGGAATGGGAGTGCAGCGCATTCCAGCGCACAGATTTGCTCTCGCTGTGGGAAGTGCCGTCTTTGATGCCATGTTCAACGGTGGCATGGCAACAACGTCGACCGAAATTGAACTGCCAGATGTGGAACCGGCTGCATTTCTAGCCCTTCTCAAATTTTTATACTCCGATGAAGTGCAAATTGGACCAGAGACCGTTATGACCACACTGTACACAGCCAAAAAGTACGCAGTACCTGCACTCGAGGCCCACTGCGTCGAATTCTTGAAGAAAAATCTACGTGCTGACAATGCGTTTATGTTGCTTACCCAGGCACGGCTTTTTGATGAGCCCCAGCTGGCTAGTCTCTGCTTAGAAAATATCGACAAGAACACAGCTGATGCGCTAGCCGCCGAGGGCTTCACAGATATTGACCTTGACACCCTCGTGGCAGTCCTGGAGAGAGACACGCTGGGTGTACGGGAAGTGCGTCTCTTCGGGGCTGCGGTTCGTTGGGCGGACGCTGAGGCCCAAAGGCAACAGTTACAGCCCACGCCGGAAAACAAGCGTCGAGTGTTGGGAAAAGCGCTTTCCCTTATTCGCTTCCCGCTCATGACTATTGAAGAGTTTGCAGCAGGTCCAGCTCAGTCTGGTATACTCACAGATCGGGAGGTGGTCAGTTTGTTTCTGCATTTTACGGTCAATCCGAAACCACATGTGGAGTTTATTGACCGACCTCGCTGTTGCCTCCGGGGGAAAGAGTGCAGCATCACACGTTTCAGTCAGGTGGAGAGCCGCTGGGGCTACAGTGGAACCAGTGACCGCATCCGGTTTTCAGTGAACCGCAGAATATTTGTGGTGGGATTTGGGCTCTATGGGTCCATACATGGTCCAACTGACTATCAGGTTAACATCCAGATCATACATACAGACAGCAACACAGTTCTCGGTCAGAATGACACAGGCTTTAGCTGCGATGGAACAGCCAGTACCTTCCGAGTCATGTTCAAGGAGCCTGTGGAAATTCTTCCCAGCGTCAACTACATTGCTTGCGCCACCCTCAAGGGACCAGACTCTCATTATGGGACTAAGGGGATGCGTAAAGTCACACATGAAGCCCCCGCTACTGGTACCAAGACCTGCTTTACATTCTGCTACGCTGCAGGCAACAACAACGGCACTTCCGTAGAGGATGGACAAATCCCAGAGGTCATCTTCTACACATAATGACCAAGCAGAATCATCTCATGATTGAAGACTCTTGCATTGCATTTTGTGGCCAATTCACTGGTCTCTATGTAGACCGGCGACCAAATACTGATCTCTCATTTCTAAAGGCTTTTGTTTTTAAGATTTGAAGCATGAGAATTCAGTCCTTCGAAGTGTACTTAGGGTACAGTTTCTGTTTCTTCCCAAGTAGCAACTCGTAGTACCACTTTGATGTTATGAACAGCCAATTTCATTGCTAATTAATGAACAAATAGCCGAACTCTGTCATTGCAATGATCTACTACAGGTACAGTTCATTAACTCTATAGAAGGCAACATTCTTTCATTTGTCCGTTTTATTTGAATGTTGACAACAGGGGTTTCTTTTGGTTCCATGTTTGACCCTTGATTGTTCAACTTATCAGTCCTTCAAATCGCACTGATGCACTTCAGCTCCAGGCGCAACAGCAAGTTTGGGGAAAGTACACTACATCTTGATTAAGACTTCAATTCAATGTAAAACTGACTGTTATGTACCCATTTTGAGTGGCCTGCACCCCTTGATAGAGGTGAAACTCAATTTCTTTGATGGCAGTGTGATCAGTAGATGTTTATATGGTGTCGTTTTAAGATAGTTGCCCACCTTGTTAATAGTGATAAACCACAAGAGCACTTGCATTCATAATGCCACTATGTATAAAATCTTGAAGTATTGACTGCAGTGAAATACTGAACACATTTCTGTTACAGAATTTGAATATTTTCTTGAGATGTTAAGGAAAATGAACAGGAAACAGCTTCATGAATGTACCAATGCTTACCTTGTAAGCACTGTAAATATAATGTCCTTGTCTTGTTTCTGTATATTTAATTAAA

Function

symbol description
btbd2a Predicted to be involved in neurogenesis. Predicted to be located in cytoplasm. Predicted to be active in P-body and cytosol. Is expressed in brain; oocyte; and ovary. Orthologous to human BTBD2 (BTB domain containing 2).
btbd1 Enables cullin family protein binding activity and identical protein binding activity. Predicted to be involved in neurogenesis. Located in P-body and nucleoplasm. Part of protein-containing complex.
btbd2 Predicted to be involved in neurogenesis. Located in P-body.

GO:

id name namespace
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03571883_03576733.mRNA True 2739 mRNA 0.48 9 3571025 3576907

Neighbor

gene id symbol gene type direction distance location
CI01000030_03551269_03557640 CREB3L3A coding downstream 12829 3550874 ~ 3558196 (-)
CI01000030_03545674_03546876 RXFP3.2B coding downstream 23972 3545142 ~ 3547053 (-)
CI01000030_03491770_03493119 CELF5A coding downstream 77284 3490119 ~ 3493741 (-)
CI01000030_03273527_03314595 CELF5, CELF5A coding downstream 256430 3273527 ~ 3314595 (-)
CI01000030_03213584_03216600 C10H19ORF70 coding downstream 354425 3213111 ~ 3216600 (-)
CI01000030_03632671_03646877 NA coding upstream 55565 3632472 ~ 3646877 (-)
CI01000030_03647991_03655331 MBD3B, MBD3 coding upstream 70337 3647244 ~ 3655331 (-)
CI01000030_03662326_03676734 TCF3B, TCF3 coding upstream 85077 3661984 ~ 3677572 (-)
CI01000030_03706598_03708425 ZBTB7A coding upstream 129434 3706341 ~ 3708733 (-)
CI01000030_03713071_03713513 NA coding upstream 135718 3712625 ~ 3713787 (-)
G160295 NA non-coding downstream 29421 3540820 ~ 3541604 (-)
G160289 NA non-coding downstream 39552 3531241 ~ 3531473 (-)
G160245 NA non-coding downstream 61938 3508830 ~ 3509087 (-)
G160239 NA non-coding downstream 68138 3502511 ~ 3502887 (-)
G160238 NA non-coding downstream 68610 3501980 ~ 3502415 (-)
G160298 NA non-coding upstream 471 3577378 ~ 3577582 (-)
G160263 NA non-coding upstream 80128 3657035 ~ 3658720 (-)
G160331 NA non-coding upstream 232517 3809424 ~ 3809754 (-)
G160332 NA non-coding upstream 233017 3809924 ~ 3810227 (-)
G160333 NA non-coding upstream 234183 3811090 ~ 3811355 (-)
G160213 NA other downstream 101863 3466353 ~ 3469162 (-)
G158980 NA other downstream 1038461 2499584 ~ 2536375 (-)
G158914 NA other downstream 1119307 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 1411734 2155584 ~ 2157390 (-)
G160713 NA other upstream 1842212 5419119 ~ 5423513 (-)
G160712 NA other upstream 1880053 5456960 ~ 5512074 (-)
G160949 NA other upstream 2220390 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 2556468 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 3124148 6701055 ~ 6704745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location