CI01000030_03647991_03655331 (MBD3B, MBD3)


Basic Information

Item Value
gene id CI01000030_03647991_03655331
gene name MBD3B, MBD3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3647244 ~ 3655331 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03647991_03655331.mRNA
ATGTCTCCGCTTTACGGGTATTGTTTACATTCACAATTGATCGACTTTACGCAAAATTCTCGTGTGTGCCCCACTGGGAAGAAGTTCCGGAGCAAGCCTCAATTGGCTCGTTACCTTGGCAACTCCATGGATCTCAGCTCCTTTGATTTCCGCACAGGCAAGATGCTCATGAGCAAACTGAACAAGAACAGACAGAGACCCAGATATGACAACAATAGCCAGACTAAGGGCAAACCCGACCTGAATACATCTCTCCCAGTGCGACAGACGGCCTCCATCTTCAAACAACCCGTTACAAAAGTTACCAACCACCCCAGCAATAAGGTTAAGACAGACCCACAGAAGGCCATTGACCAGCCCAGACAGCTTTTTTGGGAGAAGAAGTTGAGTGGCCTCAATGCCTTTGACATAGCAGAGGAGCTGGTGAAAACAATGGAGCTCCCCAAAGGCTTACAAGGAGTAGGCCCTGGGTGCACAGATAAGACCCTGTTGTCAGCGATTGCCAGTGCCCTTCACACCAGTGCGGCTCCCATCACGGGCCAGCTGTCCGCCGCTGTGGAGAAAAACCCAGGAGTCTGGCTCAACACCGCTCAGCCTCTCTGTAAGGCCTTCATCGTCACAGATGAGGATATCAGAAAGCAAGAGGAGCTGGTGTACAGTGTTCGGAAGCGACTGGAAGAGGCTTTGATGGCTGACATGTTGGCTCACGTGGAGGAAACATCTAGCGAGGGAGACGCACTCAAACAGGAGGGAAATTGTAATGATGACAAACAGGAAGGTATTCAAATGTGTCTGAATTACCTGCACATGAGTTTCCCAACACAAGCAGATGCTCTGCTGATCAACACACCACGTTACCATCTCCCAGCTTCGCTGAATATCCATACACGCCCACCAGTGATTCTCACGGAGACTGTTGGCTTGATTTTCAGACTTTTTTCTGTTTTATTGTTATTGTTTTTTAATATTTTGAACATTTTCTGAAATAACAAAATGTTGGAAACATGTAACAGTTGAACTGCCTTCTGCATTAAATGTTTTTAGGTGTGTTTTTTTTTTGTTTTTTTTTTGAGGGGGTATTTGGATTTGATATGAGGATTCGACAATCAAGTCAAAAATACAATCCTCCAGTTCTAGTGGGTGCTAAACTTTATCACAGCTGACCTAAACCGATCTGTTGATTATTCTCTGTGACTAAAAAAATGTTTGAATAATTAAAAAAATATTGACTTTTCTCTCTGTTAGTATTGTTATAACAATATTCGTAATATCACAATTTCAAGTTGGAAATCAGTATTATGCAGTTCAAATTAAGTTTTTATGTTTTTTTCTCAACACCAAATGTTTTTATCGGGGACTAGGCATTGATAAACATTAATAGTTACAAAGTGTGCAAGTATGATTTGATTTTCTTTCAGATTTTATGTTTTCGACTCATCTGGTGCTTGTTCAAACTGACTGATTTTTTTCTTTATAAGCTGTTCATACTTGACACTGAATAACATTTCCACAGTCTGAACCTGGAATTGAAATGTGAATGGTGATTCATAAATTGTGACGTGTGATTTATACAAAGTGATGTGTAAGCATCCTGTGAAAAGCAACTTAACTAAACATTTTGCTGGGTGAAAAGTATGTTTTTTTTAAATAATGGAGAAAAAAAAAAGTTTAGTTCATAGCCCACATCATCACAACGACATCCATGTTCTCTTCTGCATTTCTTAAAATAAA

Function

symbol description
mbd3b Predicted to enable actin filament binding activity; cytoskeletal motor activity; and nucleotide binding activity. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of NuRD complex and myosin complex. Is expressed in several structures, including Kupffer's vesicle; central nervous system; forerunner cell group; midbrain neural keel; and retina. Orthologous to human MBD3 (methyl-CpG binding domain protein 3).
mbd3 Enables methyl-CpG binding activity. Contributes to nucleosomal DNA binding activity. Involved in chromatin remodeling. Located in chromatin. Part of protein-containing complex.

GO:

id name namespace
GO:0008327 methyl-CpG binding molecular_function

KEGG:

id description
K11591 MBD3; methyl-CpG-binding domain protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03647991_03655331.mRNA True 1731 mRNA 0.41 7 3647244 3655331

Neighbor

gene id symbol gene type direction distance location
CI01000030_03632671_03646877 NA coding downstream 367 3632472 ~ 3646877 (-)
CI01000030_03571883_03576733 BTBD1, BTBD2, BTBD2.S, BTBD2A coding downstream 70337 3571025 ~ 3576907 (-)
CI01000030_03551269_03557640 CREB3L3A coding downstream 89048 3550874 ~ 3558196 (-)
CI01000030_03545674_03546876 RXFP3.2B coding downstream 100191 3545142 ~ 3547053 (-)
CI01000030_03491770_03493119 CELF5A coding downstream 153503 3490119 ~ 3493741 (-)
CI01000030_03662326_03676734 TCF3B, TCF3 coding upstream 6653 3661984 ~ 3677572 (-)
CI01000030_03706598_03708425 ZBTB7A coding upstream 51010 3706341 ~ 3708733 (-)
CI01000030_03713071_03713513 NA coding upstream 57294 3712625 ~ 3713787 (-)
CI01000030_03719059_03726730 MAP2K2B, MAP2K2, MAP2K2A, MP2K2, TMEK coding upstream 63204 3718535 ~ 3727455 (-)
CI01000030_03730577_03740244 PIAS4, PIAS4A coding upstream 74483 3729814 ~ 3740244 (-)
G160298 NA non-coding downstream 69662 3577378 ~ 3577582 (-)
G160295 NA non-coding downstream 105640 3540820 ~ 3541604 (-)
G160289 NA non-coding downstream 115771 3531241 ~ 3531473 (-)
G160245 NA non-coding downstream 138157 3508830 ~ 3509087 (-)
G160239 NA non-coding downstream 144357 3502511 ~ 3502887 (-)
G160263 NA non-coding upstream 1704 3657035 ~ 3658720 (-)
G160331 NA non-coding upstream 154093 3809424 ~ 3809754 (-)
G160332 NA non-coding upstream 154593 3809924 ~ 3810227 (-)
G160333 NA non-coding upstream 155759 3811090 ~ 3811355 (-)
G160351 NA non-coding upstream 314462 3969793 ~ 3970072 (-)
G160213 NA other downstream 178082 3466353 ~ 3469162 (-)
G158980 NA other downstream 1114680 2499584 ~ 2536375 (-)
G158914 NA other downstream 1195526 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 1487953 2155584 ~ 2157390 (-)
G160713 NA other upstream 1763788 5419119 ~ 5423513 (-)
G160712 NA other upstream 1801629 5456960 ~ 5512074 (-)
G160949 NA other upstream 2141966 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 2478044 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 3045724 6701055 ~ 6704745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005842 mbd3,LOC106613771,LOC105011554,LOC108430109,LOC101480296,LOC103354193,LOC104920733 coding CM030142.1 CM030142.1 10988152 ~ 10994321 (-)