G160712


Basic Information

Item Value
gene id G160712
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5456960 ~ 5512074 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU182441
ACAGAAATCAAAAGTTACAGTCATTTGTCAAATGAGAGTTCAAAATGAGAGTTCCTGTACAAATCATCAGCTTTTCCTGTTTTCTATTTTCTCTTACTGTTGTGCGAGGTCAAGAAGTAACTTGTGAGCTTAAGTCAAAAAGATTTGGAGTAAACAAGATCAACCCAGAGGGAAAAACTCTTTTCAGAGCTGGAGAAAGTGTGGTGATCACCTGCGCTGAAAGATACTGGATCTTTGGTACAAAAGAAATCATCAGATCATTTACATGTCAAGAGAACGGGGAGTGGGATCATGAGCCTGTTTGTGAGGATATTAGATGTGAAGTTCCACGTGACCAGCATGTGGATTACCCAGAATATTACTTCAGAGGAGATATGAAAGTGGGAGCAAAAAAAACTTACTATTGCATGCGTGGGTATGAACAAAAGGCAGCAGTGGCCACATGCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU182441 True 449 TUCP 0.40 3 5456960 5512074

Neighbor

gene id symbol gene type direction distance location
CI01000030_05357534_05377672 CRB1 coding downstream 79288 5357466 ~ 5377672 (-)
CI01000030_05261553_05285669 NA coding downstream 170849 5261296 ~ 5286111 (-)
CI01000030_05233712_05242487 LHX9 coding downstream 214473 5233466 ~ 5242487 (-)
CI01000030_05165181_05189898 NEK7 coding downstream 266920 5164955 ~ 5190040 (-)
CI01000030_05080350_05087998 NA coding downstream 368962 5080350 ~ 5087998 (-)
CI01000030_05519604_05542781 NA coding upstream 7472 5519546 ~ 5542807 (-)
CI01000030_05561747_05564633 NA coding upstream 49673 5561747 ~ 5564710 (-)
CI01000030_05784109_05788689 NA coding upstream 271742 5783816 ~ 5788689 (-)
CI01000030_05791222_05793350 NA coding upstream 278979 5791053 ~ 5793350 (-)
CI01000030_05801355_05807277 NA coding upstream 289247 5801321 ~ 5807277 (-)
G160723 NA non-coding downstream 50167 5403227 ~ 5406793 (-)
G160613 NA non-coding downstream 312697 5143683 ~ 5144263 (-)
G160602 NA non-coding downstream 313740 5142670 ~ 5143220 (-)
G160706 NA non-coding downstream 326950 5129016 ~ 5130010 (-)
G160784 NA non-coding upstream 40971 5553045 ~ 5553284 (-)
G160732 NA non-coding upstream 43878 5555952 ~ 5556463 (-)
G160789 NA non-coding upstream 86333 5598407 ~ 5598608 (-)
G160806 NA non-coding upstream 137345 5649419 ~ 5649871 (-)
G160824 NA non-coding upstream 149349 5661423 ~ 5662944 (-)
G160713 NA other downstream 33447 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 1963860 3490119 ~ 3493741 (-)
G160213 NA other downstream 1987798 3466353 ~ 3469162 (-)
G158980 NA other downstream 2924396 2499584 ~ 2536375 (-)
G158914 NA other downstream 3005242 2450849 ~ 2451718 (-)
G160949 NA other upstream 285223 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 621301 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 1188981 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 1231184 6746960 ~ 6752411 (-)
G163065 NA other upstream 1412409 6924483 ~ 6925657 (-)

Expression


Co-expression Network