CI01000030_05357534_05377672 (CRB1)


Basic Information

Item Value
gene id CI01000030_05357534_05377672
gene name CRB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5357466 ~ 5377672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_05357534_05377672.mRNA
GTTTAACACTTCTCAAGACCTCAGCGCTCTGCTTGGAGAAGCCTTGCCAAAACAGGGCAGAGTGCAGGGAAGCCCCATCTGACTTCCTGTGCCAGTGTCAGTTGCCTGTGCCAGCCCTGCCCCGCACGCATTGCGATTCTTCCAGCGCTCTCTGCCAACTGTCCATCTGCCAGGGCAATGCGACGTGTCAGCCCTCTGGCGCCCACCCGGGGGAACTAGTTTGCCAGTGTGAGCCTGGCTTGTTGGGGCAGGACTGTCATTCCAGTGCCCAGCTCTGCGCTCAGGGGCTGTGCGGGGACAGTGTCCGCTGTCTGGCAGTGCAAGACAGGAGCCCGGGGTATGCATGCGTCTGTCAAGAGGGTTACACTGGGAGTTCTTGCGAGAAAGAGGTGGACCATTGCTCCCCCAACCCCTGCCGCAACCGCGCCATCTGCCGCAGCAGAAGGGACGGCCCCACCTGCTTCTGCGTACCGGGATTCCAGGGCAAGCGCTGCGAGATCGAGGTAAATGAATGCGTGTCGTGGCCCTGCAGGAACGGAGCCACCTGTGTGGACAAGATCGGGCACTACATCTGTCTCTGCAGGCCTGGATACACGGGAAAAGCTGTGGGCAGCATATCAATTACCCTAAAGACTGACTGGGAGCTTCCAGTTACAGTCTGTTTGATCCAGGATGAGGTCTGTCCAGATGGCATGTGTAATAAGCCATGCAGAGATCTCGACAAAAAGCGGATTGGCATCTTTGCACTCAACACCACTGTCTCTGATGTTCCAGGTAGCAGCTGTGAGGTTCAGATTGATGAGTGTCAATCACAGCCCTGTCTCCACGGCGGCAGTTGCCATGACCACATCAATGGCTTCTCGTGTACCTGCCTGGCGGGCTTCCAGGGGGAACGCTGTGAAACGAACATTGATGAATGCAGTGACCAGCCGTGCCAAAATGGGGCTCTGTGTGTGGATGAAATCAATAGCTACCGCTGTGACTGCTCTCAAACTAACTTTACTGGTGTTCACTGTGAGATCCCACCTCCTCCCTGCTGGTCTCAACCCTGCCTCAACGACGCCCTCTGTGAGGATGAAAATGGGAACTACACCTGCATTTGCTGGCCAGGGTTCGAGGGTCATAACTGTGAGACAGATGTCAGTGAGTGTGATAGCAGTCCCTGTGTGAATGAAGGCATTTGCATTGAGCGCTCTTGGAAGACACTTTACGGCACAGAGTCCCTGTTTCCACCTCGATACAACCCCAGGCATGCTTCCGGCTTCATCTGCAAGTGTCCACCAGGTTTTTCAGGTGCCTTGTGTGAGCAAAATACTACTGCTTGTACCACCAACCCGTGTCATAATGGAGCCACATGTGAGGACTTCCTGGGCAGCTACAAGTGCATCTGCCTGTCTGAAAGCCGTGATGGAGTCCTCTATGGTGGCCATAACTGTAGCGAGCCCCTGGTGGGTTGCGAGGGCCACGAGTGCCAGAACGGGGCAGCCTGCATGCCCTTCCTGAGCGAAGGTGTACATGGCTACAGTTGCATCTGTCAGCCAGGCTACACCGGCTCTTACTGCCAGACGCCCACTGTATTCTCCTTTGAGACAATTGGAGGATTCCTGCACCTGCAGACGCCGCTGCTGGGTGCAGAAGCATACTTTAATATCACACTAAGCTTTCGCACAGTGCTGGAAAACACCGTACTCTTCCAGAGGGGTAGCGAAGGGGTCATACTCAGCCTAGAGCTGCAGGAGACACACCTGCTTCTTGATCTTAGGAGTGACCCTCAGACAGATACAACCAGCTGGACTCTGATGCTGCCTCAGGATGTATCTGATGGCGAATGGCACACAGTCGAGGCTGTACTTGGAGAAGGTACCCTGCTGTTGCAACTGCTGGAGCCATGCCAGGATGCAGATAACTGTGGTACAACAGCCCAAGTGGATACCGGCGCCCTTGAGCTGGAGTCAGCTCTACAAAGCACCTTTGTTGGAGGATTGGATGAGGGAGGGGGCACCGGCTCATTCATCGGCTGCATGAGGGACTTGTTTGTGGACTCGCAGCTGATGGTACCGGAGGACTGGTTGAGCAGCTCAGCAGTGAATGTTGTGCAAGGCTGCAGCCATCATGACCGTTGCCTTTCTAGTCCATGCGAGAACCATGGAGAGTGTGTTAACCTTTGGCAAGGTTACCAGTGCAGATGTCTGCGACCGTATGTGGGTCAAAACTGTGGTGAGGAGTATATTACTGCCAGATTTGGCCAGGAAGACTCCGCAAGCTATGCTGTCTTCACCATCAACGACCAACTGGAATCAGACATGCTCTATCTGTCCATGTTCTTGCGTACACGGAAGGAGTCTGGTCTTTTGGTGCTGCTTGCCAACAGCACTACTGAGTACTTGCAGATGTGGCTGGAAAAGGGAAAACTGACAGTGCAAGTCAATAACTTGAAGACTGTTACTGGTAAAAATGTGGTTAATGATGGCGAGATCCATTTTGTCAGCATCACCATCGAGGAGGGAATGATAACTCTACAGGAGTCAGATCATGTATTTGAACCAATGGATGTTCAACCTGTTTCCATTCAGTTTGGGGATGTGATCTATGTTGGCGGGCTGCTTGATGGACAAGAGTCATCTGCCTTCGGTGGTTACTTTAAAGGATGCTTACAAGACTTGGAGCTCAATGAGAAGAAGCTTGAGTTTTTCCCACTTGATGCGTCTGTGATGTCATATAGACCCAACCGCATGGTTGATGTTACCGCAGGCTGCACCAGTGATGACTCTTGCACTAAAAATCCCTGCCAGAATGGTGGCATGTGCTTCTCTCTATGGGACGACTTTACATGCAAATGCCCTCCTAACACAGCAGGGCAGCACTGTGAAGAGGTGAGCTGGTGCGAACTCAGCCCCTGCCCACCACAAGCAACATGCCGGGCCCTGAGCCAGGGTTATGAATGCATTTCAAATGTAACTTTTCAGGACAGCACCACTCTTGTATACCGTGGGAATGGGCTGATCTCCCGCCACCTGACCAGCATCGTTTTCACTATCCGTACACGTAAACGCAATGCAGCAGTGTTACATGCGGAGAGTGGACCAGACTTTGTGACAGTATCCATTCAAGATGGCTTTCTGGTGCTTGAGCTTTTAAGTGGAACTTCTTCTTCATCATCTTTGTCACCAGTAATCCTGCACAGCTCAAGACCAGTGGCCGATGGAGAGTGGCATGTTATAGAGCTGCTAATGGACAGTCCTTGGGCTAACAGCTCCCGGTGGATCATGGTTCCCTTAGATGAAAAGGACGTGCGTACTGTATCCGACTCAATGACGGGAAATCTAGACTTCCTCCGAGAGGGAATAGATATCATGCTAGGAGGACTGGGCCCGGAGTCTGACTGGAATTTGATTGGTTGTCTGAGTAACGTTGAGATCGGTGGAATCGTGCTTCCGTATTACGGTCCAACCGAGGTGAGATTTCCACGTACACAGAAAGAGAAGTTCAATAAGATATCAGAGACACCTGTCCAGACTGGCTGTGTTGGCGAGGTGGTGTGTGAACCCAACCCCTGCCTGCATGGAGGCATCTGTGATGATCACTTCAACCTTTTCCACTGCTTCTGTCTTCCTGGCTGGGGCGGTGATCGCTGCGAGCTGAATACAAACACATGTGTCTCCAACCCCTGTCAACACGGATACTGCAGTGTGCAGGACCTTACATACAGCTGCACATGTGAGAGTGGCTACACCGGTACCAACTGTGAGGTGAAGGTGAACGTATGTGCCGGCCACAAGTGTGCTAATGGAGGGACCTGCTTGCATGGCTTAAACAGCTATTCATGCCTCTGTCCCGACAGGTTTACCGGGCCAAATTGCAACACTCAGATTGAAGAGGCTCCGTGGTACGTAGTTGTCAGGAGCGTACCGCCCAAGCTCCCGGTATCCATCTGTGGTGATGAACAGCAGAACTACACATGTTTCAATGGAGGGAACTGTTCTGACACCAACATGCTGTGTGACTGTCTCCCTGGGTTTTCGGGTCACTGGTGTGAAATAGATCTTGATGAATGTAGATCCAACCCTTGCTTGAATGGCGGCTACTGCCAGAACATGGTCAACAAGTTCCAGTGTGTCTGTGAAATGACCTTCGCGGGCGACACCTGTGAAGTCGACGTAAGCGATCTTTACTTTTACATGGCGGCTTTGTTTTGGCAAAACCTCTTCCAGTTTCTCTCCTACCTCATTCTGCGCTTAGATGATGAGCCAGAGCTGAATGCAGAGAGTGTGACATCTGACCTGTTGCTGTCCATCATCCTGGTGTCCGTGATTCTGTTGTTGGTTCTTTTCGGCGTGGCCACAGCTTTGGTCATGACGGTGAACCGACGGGCCACACGAGGCACCTACAGCCCCAGTCGACAGGAGAAGGAAGGTTCAAGAGTGGAGATGTGGAACATTGTGCAGCCTCCACCAATGGAAAGACTCATCTGAGCCAATCAACCAATAATCAGCCAATCATGTTGTTCGTGGCTTGTTGGCTTTACAACATGAAGAAAAAA

Function

symbol description
crb1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell projection morphogenesis and establishment or maintenance of epithelial cell apical/basal polarity. Part of protein-containing complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in pigmented paravenous chorioretinal atrophy and retinal disease (multiple). Orthologous to human CRB1 (crumbs cell polarity complex component 1).

NR:

description
Crumbs homolog 1 (Drosophila)

GO:      GO:0043234, GO:0001707, GO:0016021, GO:0016020, GO:0045197, GO:0005509, GO:0060042

KEGG:

id description
K16681 CRB; protein crumbs

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_05357534_05377672.mRNA True 4540 mRNA 0.52 12 5357466 5377672

Neighbor

gene id symbol gene type direction distance location
CI01000030_05261553_05285669 NA coding downstream 71355 5261296 ~ 5286111 (-)
CI01000030_05233712_05242487 LHX9 coding downstream 114979 5233466 ~ 5242487 (-)
CI01000030_05165181_05189898 NEK7 coding downstream 167426 5164955 ~ 5190040 (-)
CI01000030_05080350_05087998 NA coding downstream 269468 5080350 ~ 5087998 (-)
CI01000030_05003713_05011870 NA coding downstream 345247 5002452 ~ 5012219 (-)
CI01000030_05477128_05482150 NA coding upstream 99456 5477128 ~ 5482150 (-)
CI01000030_05519604_05542781 NA coding upstream 141874 5519546 ~ 5542807 (-)
CI01000030_05561747_05564633 NA coding upstream 184075 5561747 ~ 5564710 (-)
CI01000030_05784109_05788689 NA coding upstream 406144 5783816 ~ 5788689 (-)
CI01000030_05791222_05793350 NA coding upstream 413381 5791053 ~ 5793350 (-)
G160613 NA non-coding downstream 213203 5143683 ~ 5144263 (-)
G160602 NA non-coding downstream 214246 5142670 ~ 5143220 (-)
G160706 NA non-coding downstream 227456 5129016 ~ 5130010 (-)
G160704 NA non-coding downstream 229151 5127877 ~ 5128315 (-)
G160723 NA non-coding upstream 25555 5403227 ~ 5406793 (-)
G160710 NA non-coding upstream 38649 5416321 ~ 5519953 (-)
G160711 NA non-coding upstream 72894 5450566 ~ 5477650 (-)
G160735 NA non-coding upstream 95892 5473564 ~ 5476892 (-)
G160784 NA non-coding upstream 175373 5553045 ~ 5553284 (-)
CI01000030_03491770_03493119 CELF5A other downstream 1864366 3490119 ~ 3493741 (-)
G160213 NA other downstream 1888304 3466353 ~ 3469162 (-)
G158980 NA other downstream 2824902 2499584 ~ 2536375 (-)
G158914 NA other downstream 2905748 2450849 ~ 2451718 (-)
CI01000030_02155901_02157314 NA other downstream 3198175 2155584 ~ 2157390 (-)
G160713 NA other upstream 41447 5419119 ~ 5423513 (-)
G160712 NA other upstream 79288 5456960 ~ 5512074 (-)
G160949 NA other upstream 419625 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 755703 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 1323383 6701055 ~ 6704745 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021148 crb1 coding NC_007133.7 CM002906.2 23493170 ~ 23545828 (-)