Gene
RNA
| Item | Value |
|---|---|
| gene id | G160710 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 5416321 ~ 5519953 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU182438 | False | 813 | lncRNA | 0.36 | 4 | 5416321 | 5494819 |
| TU182433 | False | 276 | lncRNA | 0.41 | 4 | 5468876 | 5519953 |
| TU182432 | True | 672 | lncRNA | 0.35 | 3 | 5493959 | 5494819 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000030_05357534_05377672 | CRB1 | coding | downstream | 38649 | 5357466 ~ 5377672 (-) |
| CI01000030_05261553_05285669 | NA | coding | downstream | 130210 | 5261296 ~ 5286111 (-) |
| CI01000030_05233712_05242487 | LHX9 | coding | downstream | 173834 | 5233466 ~ 5242487 (-) |
| CI01000030_05165181_05189898 | NEK7 | coding | downstream | 226281 | 5164955 ~ 5190040 (-) |
| CI01000030_05080350_05087998 | NA | coding | downstream | 328323 | 5080350 ~ 5087998 (-) |
| CI01000030_05561747_05564633 | NA | coding | upstream | 41794 | 5561747 ~ 5564710 (-) |
| CI01000030_05784109_05788689 | NA | coding | upstream | 263863 | 5783816 ~ 5788689 (-) |
| CI01000030_05791222_05793350 | NA | coding | upstream | 271100 | 5791053 ~ 5793350 (-) |
| CI01000030_05801355_05807277 | NA | coding | upstream | 281368 | 5801321 ~ 5807277 (-) |
| CI01000030_05996557_05996952 | NA | coding | upstream | 476073 | 5996026 ~ 5997542 (-) |
| G160723 | NA | non-coding | downstream | 9528 | 5403227 ~ 5406793 (-) |
| G160613 | NA | non-coding | downstream | 272058 | 5143683 ~ 5144263 (-) |
| G160602 | NA | non-coding | downstream | 273101 | 5142670 ~ 5143220 (-) |
| G160706 | NA | non-coding | downstream | 286311 | 5129016 ~ 5130010 (-) |
| G160784 | NA | non-coding | upstream | 33092 | 5553045 ~ 5553284 (-) |
| G160732 | NA | non-coding | upstream | 35999 | 5555952 ~ 5556463 (-) |
| G160789 | NA | non-coding | upstream | 78454 | 5598407 ~ 5598608 (-) |
| G160806 | NA | non-coding | upstream | 129466 | 5649419 ~ 5649871 (-) |
| G160824 | NA | non-coding | upstream | 141470 | 5661423 ~ 5662944 (-) |
| CI01000030_03491770_03493119 | CELF5A | other | downstream | 1923221 | 3490119 ~ 3493741 (-) |
| G160213 | NA | other | downstream | 1947159 | 3466353 ~ 3469162 (-) |
| G158980 | NA | other | downstream | 2883757 | 2499584 ~ 2536375 (-) |
| G158914 | NA | other | downstream | 2964603 | 2450849 ~ 2451718 (-) |
| CI01000030_02155901_02157314 | NA | other | downstream | 3257030 | 2155584 ~ 2157390 (-) |
| G160949 | NA | other | upstream | 277344 | 5797297 ~ 5800426 (-) |
| CI01000030_06131710_06138371 | NA | other | upstream | 613422 | 6131090 ~ 6138406 (-) |
| CI01000030_06701334_06704398 | MGC53794, FAM195A, FAM195A.S, MCRIP2 | other | upstream | 1181102 | 6701055 ~ 6704745 (-) |
| CI01000030_06747047_06752255 | NA | other | upstream | 1223305 | 6746960 ~ 6752411 (-) |
| G163065 | NA | other | upstream | 1404530 | 6924483 ~ 6925657 (-) |
