RNA id: TU182441


Basic Information

Item Value
RNA id TU182441
length 449
RNA type TUCP
GC content 0.40
exon number 3
gene id G160712
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5456960 ~ 5512074 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAAATCAAAAGTTACAGTCATTTGTCAAATGAGAGTTCAAAATGAGAGTTCCTGTACAAATCATCAGCTTTTCCTGTTTTCTATTTTCTCTTACTGTTGTGCGAGGTCAAGAAGTAACTTGTGAGCTTAAGTCAAAAAGATTTGGAGTAAACAAGATCAACCCAGAGGGAAAAACTCTTTTCAGAGCTGGAGAAAGTGTGGTGATCACCTGCGCTGAAAGATACTGGATCTTTGGTACAAAAGAAATCATCAGATCATTTACATGTCAAGAGAACGGGGAGTGGGATCATGAGCCTGTTTGTGAGGATATTAGATGTGAAGTTCCACGTGACCAGCATGTGGATTACCCAGAATATTACTTCAGAGGAGATATGAAAGTGGGAGCAAAAAAAACTTACTATTGCATGCGTGGGTATGAACAAAAGGCAGCAGTGGCCACATGCACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182454 lncRNA downstream 50167 5403227 ~ 5406793 (-) True G160723
TU182324 lncRNA downstream 178970 5276494 ~ 5277990 (-) True G160605
TU182332 lncRNA downstream 312697 5143683 ~ 5144263 (-) True G160613
TU182321 lncRNA downstream 313740 5142670 ~ 5143220 (-) True G160602
TU182426 lncRNA downstream 326950 5129016 ~ 5130010 (-) True G160706
TU182515 lncRNA upstream 40971 5553045 ~ 5553284 (-) True G160784
TU182463 lncRNA upstream 43878 5555952 ~ 5556463 (-) True G160732
TU182520 lncRNA upstream 86333 5598407 ~ 5598608 (-) True G160789
TU182537 lncRNA upstream 137345 5649419 ~ 5649871 (-) True G160806
TU182557 lncRNA upstream 149349 5661423 ~ 5662944 (-) True G160824
CI01000030_05357534_05377672.mRNA mRNA downstream 79288 5357466 ~ 5377672 (-) True CI01000030_05357534_05377672
CI01000030_05261553_05285669.mRNA mRNA downstream 170849 5261296 ~ 5286111 (-) False CI01000030_05261553_05285669
CI01000030_05233712_05242487.mRNA mRNA downstream 214473 5233466 ~ 5242487 (-) True CI01000030_05233712_05242487
CI01000030_05165181_05189898.mRNA mRNA downstream 266920 5164955 ~ 5190040 (-) True CI01000030_05165181_05189898
CI01000030_05080350_05087998.mRNA mRNA downstream 368962 5080350 ~ 5087998 (-) True CI01000030_05080350_05087998
CI01000030_05519604_05542781.mRNA mRNA upstream 7472 5519546 ~ 5542807 (-) True CI01000030_05519604_05542781
CI01000030_05561747_05564633.mRNA mRNA upstream 49673 5561747 ~ 5564710 (-) True CI01000030_05561747_05564633
CI01000030_05784109_05788689.mRNA mRNA upstream 271742 5783816 ~ 5788689 (-) True CI01000030_05784109_05788689
CI01000030_05791222_05793350.mRNA mRNA upstream 278979 5791053 ~ 5793350 (-) True CI01000030_05791222_05793350
CI01000030_05801355_05807277.mRNA mRNA upstream 289247 5801321 ~ 5807277 (-) False CI01000030_05801355_05807277
TU182444 other downstream 33447 5419119 ~ 5423513 (-) True G160713
TU181861 other downstream 1963860 3361802 ~ 3478867 (-) False G160207
TU181889 other downstream 1987798 3466353 ~ 3469162 (-) False G160213
TU181890 other downstream 1987798 3466353 ~ 3469162 (-) True G160213
TU180496 other downstream 2924396 2499584 ~ 2532564 (-) False G158980
TU182698 other upstream 285223 5797297 ~ 5800426 (-) True G160949
TU183215 other upstream 621301 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 1188981 6701731 ~ 6704145 (-) True G161511
TU183401 other upstream 1231184 6743258 ~ 6745350 (-) False G161515
TU183402 other upstream 1231224 6743298 ~ 6745350 (-) False G161515

Expression Profile