RNA id: CI01000030_05801355_05807277.mRNA


Basic Information

Item Value
RNA id CI01000030_05801355_05807277.mRNA
length 2368
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000030_05801355_05807277
representative False

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5801321 ~ 5807277 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGACAGAAAACCCTCAGGAAGTCTTCTTCCACTACTTGCTTTTTTACTTCTGATTGGTGCTCTCAACGTTCATACAAGAAGCCTTGCAAGTCCAGTAAACCAGGTTTTCCATTCAAAAGATGATTCTGACGTCCAGAATCAGATTTTGGCATTTTTACTACGGAAAAACATCATGCCTGTCCAAGAGAAGGATGTATTAGGATTTGAGCTGGCCAGAAAAATCACAGAGCTGCAGGGGTTTGAGAGTATGTGGTTCACGTTTATTCTACTTCAGCTTCTGCCTCAGCTCACACTCAGTGCTCGCTGTCCCAGCGGATGCGTTTGTGATGTTAGGGGTTCCGCAAAATGCATTGGGGGCATCACCGACGTACCCCCTCTCGACCCAAACACAACATTTCTACTCTTGCTGAACAACACAAACATAAAGGTTCTCAAAGACCGAAGTTTTCAGTCGCTCTCTCTTCTGCTACGATTAATGATCACGCATAGCACTCTTGACACCATTCAACCAGAAGCCTTCCATGGTGCTCCACAGCTCCTGTCTATCAAAATGTCATCAAACGCACTCACGGTCATCCCACCCAATGTATTTAGTGAGCAGAGCATTTTGGAGCAACTGCATTTAGATGGTAACAATATAGTTTCCATTACTTCAGACCTCTTCAAGGGGTTGGTCAACCTAACCGAGCTAGATCTGAGCAAGAACCGCATTTCCCAGCTGAATGCTGACGTCTTCCAGAACTTGACTAAGCTGAATTACCTAAACTTAGGTAGTAACCAACTGAGGAGCCTCCCAAACACACTTTTTCACAACCTAAGGCAACTCAAATCTCTGGTACTCTCGTTCAACCAGCTGGAGACTCTGGAAAGTGGTTCCTTTGACCATCTAAGCAACCTGTTGTTGTTAATGCTACAGAAGAACCAGATCCGAGAGGTTCCTCCGCGTCTTTTCTGGCACTTGCCATCCCTGCTCACCCTCTCAATGTCAGGCAACCAACTCAGGTATATTCCAGCCAAAAGTTTCTACTACTTACCCAACCTAACCAAGCTCACCCTCTTCAAGAACCCCTTGATCTCCCTACCTGACCAGCTGATGGGCAACATGCCGAGGCTCCAAGAATTGTACCTTTACGAAACTAATCTTGTCACTGTCCCTTGGAACCTTTTTGCTAACATGACCAACCTAAGGTTTCTCAATTTACACTTTAACGACAATTTGACCTCCCTACCAATGGACCTCTTCTGTTGCCTGCCCAACCTGAAGAAACTGTCCCTGAGATACAACAACCTTCGGGCGCTGGATCCGGAGCTCTTCTCGAAATTGACTAGTCTTCAAATTCTAATGCTTAATGGTAACAATCTTGAGTCTCTCCCAGCGACAATCTTTTGCAATACCTCCAGACTAGAAACACTGGACCTGAACCAAAACCATCTAAGGTATCTCCCCGGAGATATTTTTGTACACACAAAGGCGCTGAATGTGCTCTCTCTTAGTGGCAATAAATGGAAGTGTGATTGTAGTATTTTGGGTATTGCAGAATGGATTCGCGACAACCCAAGGGTAATCAATGACTTGGACAAAGGAGTAGCATGCTATGAACCATACTACTTACAAAACCATCCGCTGCAAACATTGACCTATGAAGAACTCCAATGTGGTCGGGGTGTTTTCCAGACAACGTTTATGACTACAAGCATCATTCCTACACAGGTTCCTGCAACGTCAACCCCACTATCATCTTCGGCTACAAGCACAAAACCAAGAACTACAGCAACTTCAACTGCACCTTCAACTTCAAGCACTTTTGCAACAACTGCCTCTCTATTTTCTCCTACAGCTGATCATGCATACATACGACAAGGCAATGACTACAACGATGATCTGGTGTTCTACAATACAATTGTCTTGGAAAACGGACCTGAAATTGTTCACAACAATCATTACGGTGGTTGGGTGTACCTGTGGACTGTCCCGTCGACTGGTCCATACAGTGGTTTCATGATGGCTTTGTACATTGTTCTCTTGGTCATCGGTGTAGTACTGATTGTGGCCACCATGTATGCTTTGTATCGACTTCATAAGGTGGTGTGGGTGTTAGGGAAAGTCACTTTGGGAGACAATCAGAGAATAATGTTTCCACATTCCAATGCTTTACATTCACCAAAAAATGATATGGACACACCCTTGCTAGCTGTTTGCAAAATTTTATCTGCAAGACCAAATAAAATGTTTCTGTACCTTGAGAGTGTTTTCTTTGCCATGTATGCCACCTGGTGGTTAAACAATATAGAGCAGAAGTTATGTGGCAAATATAACATATTTACAATATAGCCTACCAGCCTATTTATTTCCTCAAACAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182713 lncRNA downstream 25402 5772578 ~ 5775919 (-) True G160961
TU182688 lncRNA downstream 110789 5684834 ~ 5690532 (-) True G160942
TU182685 lncRNA downstream 118926 5681874 ~ 5682395 (-) True G160940
TU182566 lncRNA downstream 124037 5677082 ~ 5677284 (-) True G160833
TU182557 lncRNA downstream 138377 5661423 ~ 5662944 (-) True G160824
TU182780 lncRNA upstream 46360 5853637 ~ 5854418 (-) True G161023
TU182767 lncRNA upstream 69090 5876367 ~ 5876944 (-) False G161013
TU182768 lncRNA upstream 69163 5876440 ~ 5878811 (-) True G161013
TU182796 lncRNA upstream 84132 5891409 ~ 5897974 (-) False G161034
TU182797 lncRNA upstream 84132 5891409 ~ 5896207 (-) True G161034
CI01000030_05791222_05793350.mRNA mRNA downstream 7971 5791053 ~ 5793350 (-) True CI01000030_05791222_05793350
CI01000030_05784109_05788689.mRNA mRNA downstream 12632 5783816 ~ 5788689 (-) True CI01000030_05784109_05788689
CI01000030_05561747_05564633.mRNA mRNA downstream 236611 5561747 ~ 5564710 (-) True CI01000030_05561747_05564633
CI01000030_05519604_05542781.mRNA mRNA downstream 258514 5519546 ~ 5542807 (-) True CI01000030_05519604_05542781
CI01000030_05477128_05482150.mRNA mRNA downstream 319171 5477128 ~ 5482150 (-) True CI01000030_05477128_05482150
CI01000030_05996557_05996952.mRNA mRNA upstream 188749 5996026 ~ 5997542 (-) True CI01000030_05996557_05996952
CI01000030_06042392_06063112.mRNA mRNA upstream 234977 6042254 ~ 6063126 (-) True CI01000030_06042392_06063112
CI01000030_06070218_06078371.mRNA mRNA upstream 262865 6070142 ~ 6078378 (-) True CI01000030_06070218_06078371
CI01000030_06079733_06090776.mRNA mRNA upstream 272414 6079691 ~ 6090776 (-) True CI01000030_06079733_06090776
CI01000030_06092897_06102203.mRNA mRNA upstream 285563 6092840 ~ 6102631 (-) False CI01000030_06092897_06102203
TU182698 other downstream 895 5797297 ~ 5800426 (-) True G160949
TU182441 other downstream 289247 5456960 ~ 5512074 (-) True G160712
TU182444 other downstream 377808 5419119 ~ 5423513 (-) True G160713
TU181861 other downstream 2308221 3361802 ~ 3478867 (-) False G160207
TU183215 other upstream 326098 6133375 ~ 6133500 (-) True G161355
TU183395 other upstream 893778 6701731 ~ 6704145 (-) True G161511
TU183401 other upstream 935981 6743258 ~ 6745350 (-) False G161515
TU183402 other upstream 936021 6743298 ~ 6745350 (-) False G161515
TU183403 other upstream 936021 6743298 ~ 6745350 (-) True G161515

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041560 True 1272 mRNA 0.44 2 NC_007133.7 24306145 ~ 24307598 (-)