G161023


Basic Information

Item Value
gene id G161023
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5853637 ~ 5854418 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU182780
GCATGGAGAGGAAGCAATGATGCATCTAACCTTTTATGCAACACTAGTATAATTAGGAATGCTAACGATTAATTGACGATTGATTAATTGTCGATAATAATTTAATCAATAAAACTTAACAATGATCGATTAAGCAAGGTCATCATTAGAGAGCGTAGTTTAGAGGTAAGTGACATGACAAAACACATGCTGCAGATACACGAGGAAAAATGAAGAGAGCACGAAGTAGTTACATATTCTAAGTGTATTAATGTCATCAAGCCATAGGCTAGCAGTTTATTTCGAAATAATTAACCAAGGGTCGAAAAAAACTTAAACAAGTGATTTTACGCAACTACTTGTGTAAAGGACACAATAAAAGTACACAGAATAAACAGGTAATATCCTGGATGATGATGATCTTCCAGCGTTGTTTCAGCTGTGCGCTCCAATTCTATGGCACATGGTAAATCAATCTGAGCGTTCAAACCAATCCAAGCATGCTCCAGTTGTAAAACAGTGTCCGACTGGTCTAGACCAGTTTCCATTGGTTGAACTTATGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182780 True 544 lncRNA 0.37 2 5853637 5854418

Neighbor

gene id symbol gene type direction distance location
CI01000030_05801355_05807277 NA coding downstream 46360 5801321 ~ 5807277 (-)
CI01000030_05791222_05793350 NA coding downstream 60287 5791053 ~ 5793350 (-)
CI01000030_05784109_05788689 NA coding downstream 64948 5783816 ~ 5788689 (-)
CI01000030_05561747_05564633 NA coding downstream 288927 5561747 ~ 5564710 (-)
CI01000030_05519604_05542781 NA coding downstream 310830 5519546 ~ 5542807 (-)
CI01000030_05996557_05996952 NA coding upstream 141608 5996026 ~ 5997542 (-)
CI01000030_06042392_06063112 VTG1, VTG7, VTG6, VTG4 coding upstream 187836 6042254 ~ 6063126 (-)
CI01000030_06070218_06078371 VTG1 coding upstream 215724 6070142 ~ 6078378 (-)
CI01000030_06079733_06090776 NA coding upstream 225273 6079691 ~ 6090776 (-)
CI01000030_06092897_06102203 NA coding upstream 238422 6092840 ~ 6102631 (-)
G160961 NA non-coding downstream 77718 5772578 ~ 5775919 (-)
G160942 NA non-coding downstream 163105 5684834 ~ 5690532 (-)
G160940 NA non-coding downstream 171242 5681874 ~ 5682395 (-)
G160833 NA non-coding downstream 176353 5677082 ~ 5677284 (-)
G161013 NA non-coding upstream 21949 5876367 ~ 5878811 (-)
G161034 NA non-coding upstream 36991 5891409 ~ 5897974 (-)
G161040 NA non-coding upstream 43780 5898198 ~ 5898398 (-)
G161041 NA non-coding upstream 45751 5900169 ~ 5900860 (-)
G161043 NA non-coding upstream 48518 5902936 ~ 5903155 (-)
G160949 NA other downstream 53211 5797297 ~ 5800426 (-)
G160712 NA other downstream 341563 5456960 ~ 5512074 (-)
G160713 NA other downstream 430124 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 2360537 3490119 ~ 3493741 (-)
CI01000030_06131710_06138371 NA other upstream 278957 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 846637 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 888840 6746960 ~ 6752411 (-)
G163065 NA other upstream 1070065 6924483 ~ 6925657 (-)
G163139 NA other upstream 1295056 7149474 ~ 7150144 (-)

Expression


Co-expression Network