G160940


Basic Information

Item Value
gene id G160940
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 5681874 ~ 5682395 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU182685
TCAGGATGATGAAACTCCACACAGCCCACAGACTTGCTCTGAGACTGCCGGGTGCCAGGGGGGACGTCAATTTTCGACTTTATAAATCTAAAATTGATGAAATATGAGGACACTCTTCACCGGCTATGGCTTAGTTTTATATTTTAGAGGTCCTTTACTGCAGCCACTCGGGATTTGGCCTCTGATTCATGTTACACCAAAGCCAAGAGCCTTTGAAATGCGAGAGTTTGTTCCAAATACCACAACAACATTGTGTACAGCAGATTTGATTTCGGCCGCTTATCATGTGGAAGAACTGAAAGTAATCTGTTGATTAGCATGTTTCTTCAACTATGGCCACTTTTGGACCTGTGGACTTTAGAATATACAATATGTATAATATATACATAACAAAACACGTATAATGTTGACTAAAAATGTTCAAAATTGGACATACATTCTACATTCTATTCACTTTGATTTTTCTTTATTGTATTATGTATATGTCAGGTCTCATTTCATTTTAAGCATGCTGTTCACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182685 True 522 lncRNA 0.38 1 5681874 5682395

Neighbor

gene id symbol gene type direction distance location
CI01000030_05561747_05564633 NA coding downstream 117164 5561747 ~ 5564710 (-)
CI01000030_05519604_05542781 NA coding downstream 139067 5519546 ~ 5542807 (-)
CI01000030_05477128_05482150 NA coding downstream 199724 5477128 ~ 5482150 (-)
CI01000030_05357534_05377672 CRB1 coding downstream 304202 5357466 ~ 5377672 (-)
CI01000030_05261553_05285669 NA coding downstream 395763 5261296 ~ 5286111 (-)
CI01000030_05784109_05788689 NA coding upstream 101421 5783816 ~ 5788689 (-)
CI01000030_05791222_05793350 NA coding upstream 108658 5791053 ~ 5793350 (-)
CI01000030_05801355_05807277 NA coding upstream 118926 5801321 ~ 5807277 (-)
CI01000030_05996557_05996952 NA coding upstream 313631 5996026 ~ 5997542 (-)
CI01000030_06042392_06063112 VTG1, VTG7, VTG6, VTG4 coding upstream 359859 6042254 ~ 6063126 (-)
G160833 NA non-coding downstream 4590 5677082 ~ 5677284 (-)
G160824 NA non-coding downstream 18930 5661423 ~ 5662944 (-)
G160806 NA non-coding downstream 32003 5649419 ~ 5649871 (-)
G160789 NA non-coding downstream 83266 5598407 ~ 5598608 (-)
G160732 NA non-coding downstream 125411 5555952 ~ 5556463 (-)
G160942 NA non-coding upstream 2439 5684834 ~ 5690532 (-)
G160961 NA non-coding upstream 90183 5772578 ~ 5775919 (-)
G161023 NA non-coding upstream 171242 5853637 ~ 5854418 (-)
G161013 NA non-coding upstream 193972 5876367 ~ 5878811 (-)
G160712 NA other downstream 169800 5456960 ~ 5512074 (-)
G160713 NA other downstream 258361 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 2188774 3490119 ~ 3493741 (-)
G160213 NA other downstream 2212712 3466353 ~ 3469162 (-)
G158980 NA other downstream 3149310 2499584 ~ 2536375 (-)
G160949 NA other upstream 114902 5797297 ~ 5800426 (-)
CI01000030_06131710_06138371 NA other upstream 450980 6131090 ~ 6138406 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 1018660 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 1060863 6746960 ~ 6752411 (-)
G163065 NA other upstream 1242088 6924483 ~ 6925657 (-)

Expression


Co-expression Network