CI01000030_06092897_06102203


Basic Information

Item Value
gene id CI01000030_06092897_06102203
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6092840 ~ 6102631 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_06092897_06102203.mRNA
AGCCAGTCCTCCACAGTGGATGGGTGGGAGCTTCTTGTTTCATGGCTTCTTGGTATTGATATGTCTCTCACCCATCTGGTTTTGGTTCCTTTGTATCAAACAAGACATCCTGCACACCTGCACAATTTACAAAGTTAAAACTTTCCACTACAGTGTCTGTCTGCACAGCTTCTAAAACAGACAGAAACTACAACTAACATCAGAGAACAACAGCAACGTAATATAGGTAAATCTAAACTTTCATTGCATTTAAACATTACATTAAAACATAATTTTAATCATGACTTTCTGAAGTGTGTTACTGTATTCATTATTCTGACTGTAAGGACCCTTCAAGTGTGTCTCAGCGAAACTCAGTCAGTGTTTTTTTCAGGACGAGCAGCTCTGTGTCTTTCATTGTATATCTGAATTTACAGAGAGTGAAGAACATGAACTCCAGACTCTTACCTCTGATCCTGCTGCTGCTGCACATTCCAGGCTCTCTGACACTGGAGCTCCAGCCTGTGACCTGTAGTCAAGAGAGTATTTGTGCTGTGAAGGGGTCTCAGGTGACACTGAAGTGCTCTTACTCCTACATCAACATCAAAACTGTGTTCTGGTTCAGCCAAAAACAAAGTCCAAACTGGAGAAAAAACAACAAACCTGAAGATTTGACTTTAGACTCAGACTACTCAGGAAGAGTAAAGCCATTCATCAGTCGTTACCAATCAGAGCTCATAATTTCAGACCTGAGAGAGAGAGACTCTGGAGAATATCAGCTCATGTTCATCATGAAGGATGGAGTTAAACTCTGGCATTACGGTCAGTCTGGTGACTTAAAGGATCTGCGTGAGGAGCCTCAGTTTGCTGGTCGTGTGGAGTATGTGGGGAACACACTGAGAATCAAAGAGCTCAAGATGAACGACTCTGGAGAATATCGATTCAGGATCATCACTGACACAACAGGAAAAACATACTTTGGACCATCTGGAGTCATTCTTACTGTTACAGATACGATGGTGATAAGCAGCACAAACATTACATCAGAGGGACAGGAAGTGATATTAAGCTGTTCAACTAAATGCACTCTGAGCGACAAACACACTTACATCTGGTACAAGAACGGATGGCAGATAACGGATGGATTCACTAAAGACAACAAGCTGTACCTGGACTCAGTCAGCAATGAAGAGCTTCAAGAGTATTCCTGTGCTGTAGGAGATCCAGTGGACAGCACAGCGTTCAGCCATTATACAGTCATTCTGCTGGTGTTTTTACCTCAGTTTCTCATAATAGCAGCTCTGTGGATGTGTGTTACTGTATTCATGATTCTGACTGTAAGGACCCTTCAAGTGTGTCTCAGTGAAACTCAGTCAGTGTCTTTTCAGGACGAGCAGCTCTGTGTCTTTCATTGTCTGAATTTACAGAGAGTGAAGAACATGAACTCCAGACTCGTACCTCTGATCCTGCTGCTGCTGCACATTCCAGGCTCTCTGACACTGGAGCTCCAGCCTGTGACCTGTAGTCAAGAGAGTATTTGTGCTGTGAAGGGGTCTCAGGTGAAACTGAATCTAGATTCTGGTCAGTTCAGCTGTTTTCATTTGTCATGTGATGAAGTGTTTGTTAATTTTACTTTAATTCAGACCTGCAGAGTTTGGTATTATTATTACTGGATGAAGGATGGACAGTATTTCACAAGTACAGGGACTCGCAACATACATGTGTTACTGAACAGAGATCCTGTCAGCTATTCCTGTGCTCTTGATCAAAAACAACCCTCTTCTTCTCTGTGTATTTCTGAGGATCGCTGCTGGGATGTGACGTACACCTCTAGAAGAGTCTGTGCTTTGATGGGCTCAACAGTAGACATTTCCTGCACATACTCACATCCCTCTGGTTATACTGTAAATAAAACATTCTGGCATTACGGTCAGTCTGGTGACTTCAAGGATCTGCGTGAGGAGCCTCAGTTTGCTGGTCGTGTGGAGTATGTGGGGAACACACTGAGAATCAAAGAGCTCAAGATCAGCGACTCTGGAGAATATCGATTCAGGATCATCACTGACAGAACAGGAGGAAAATACTCTGGATCTCCTGGAGTCATTCTTACTGTTACAGATACGATGGTGACAAGCAGCCCAGATATTATATCTGAGGGACAGGAAGTGATATTAAGCTGTTCAACTAAATGTACTCTGAGCGACAAACACACTTACATCTGGTACAAGAACGGACGGCAGGTAACGGATGGATTCACTAAAGACAGCAAGCTGTACCTGGACTCAATCAGTAATGAAGAGCTTCAAGAGTATTCCTGTGCTGTAGGAGCTCGAGAGGAGAGCACAGCACTACGAAACACTGCAGTCGTACTGTGTGTGTTTTTGACTCTTGCACTCATAGGAGTCCTGTGGTATAGGAGGAGAAGGTGTACCTTGTCTAAACCCCACAGGGTTGAAAAGGAGGAGGTGCTGTATGACTCGGTGACTAATATCCCTGCATCCTCTGACCTCACACAAAAAGCAGATGCCTACAATCAAGACATTAATTATTCCAGCGTTAGTTTTAAAACAAAATATATGTCTTCAATCTCTACAGCTTTATGTGAAACAGATGCCACAGAAACAGAGGCTGTCCACTATGCCACTGTCATGTTCAAATAGCACAGTGTTGTGCTCTAGTGAGCTAATAATATTACTGTATTTGGGATATATAATATA

Function

NR:

description
novel protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_06092897_06102203.mRNA False 2696 mRNA 0.43 14 6092840 6102631

Neighbor

gene id symbol gene type direction distance location
CI01000030_06079733_06090776 NA coding downstream 2064 6079691 ~ 6090776 (-)
CI01000030_06070218_06078371 VTG1 coding downstream 14462 6070142 ~ 6078378 (-)
CI01000030_06042392_06063112 VTG1, VTG7, VTG6, VTG4 coding downstream 29714 6042254 ~ 6063126 (-)
CI01000030_05996557_05996952 NA coding downstream 95298 5996026 ~ 5997542 (-)
CI01000030_05801355_05807277 NA coding downstream 285563 5801321 ~ 5807277 (-)
CI01000030_06107092_06109831 NA coding upstream 4022 6106653 ~ 6110976 (-)
CI01000030_06131710_06138371 NA coding upstream 28459 6131090 ~ 6138406 (-)
CI01000030_06143122_06149273 FAM20CL coding upstream 40323 6142954 ~ 6151252 (-)
CI01000030_06162749_06165879 NPTXRB coding upstream 59181 6161812 ~ 6166515 (-)
CI01000030_06168725_06172057 POLR3F coding upstream 65823 6168454 ~ 6172057 (-)
G161099 NA non-coding downstream 66824 6025636 ~ 6026016 (-)
G161097 NA non-coding downstream 70976 6021558 ~ 6021864 (-)
G161096 NA non-coding downstream 72082 6020279 ~ 6020758 (-)
G161095 NA non-coding downstream 73008 6019318 ~ 6019832 (-)
G161094 NA non-coding downstream 74072 6018446 ~ 6018768 (-)
G161352 NA non-coding upstream 11820 6114451 ~ 6118974 (-)
G161359 NA non-coding upstream 72955 6175586 ~ 6175946 (-)
G161375 NA non-coding upstream 78325 6180956 ~ 6181404 (-)
G161376 NA non-coding upstream 79636 6182267 ~ 6182496 (-)
G160949 NA other downstream 292414 5797297 ~ 5800426 (-)
G160712 NA other downstream 580766 5456960 ~ 5512074 (-)
G160713 NA other downstream 669327 5419119 ~ 5423513 (-)
CI01000030_03491770_03493119 CELF5A other downstream 2599740 3490119 ~ 3493741 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 598424 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 640627 6746960 ~ 6752411 (-)
G163065 NA other upstream 821852 6924483 ~ 6925657 (-)
G163139 NA other upstream 1046843 7149474 ~ 7150144 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location