CI01000030_06162749_06165879 (NPTXRB)


Basic Information

Item Value
gene id CI01000030_06162749_06165879
gene name NPTXRB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6161812 ~ 6166515 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_06162749_06165879.mRNA
ATTACAAATCGAGCTGTCCCACATTAGAATAAAAGGTTCTGGAGCCCTGCTTTAGGGAATGTTTAGTTGATGATCTGTTTGATCTGTTTGGATGAGTTTAAAGGGCAAAACTGTCATTTCCATAGCTGATAAAGTTTTTTTTAACACATGCGTCAGGATACAGCACTGTTTAATGCTACACAAAGAGGAAATAACTGCATTTTACAAATCAGATTTATTCAGTCATCAAAAATCACTAAAATTTGCTAACAATGTTAATGCTCTAATTTGCATTTTCAGTATCTCAGTATGTTCGCATGTTCTACCAGAGTAGCCTATTCATAGATGATGAAGAGACCAAAAGGTGTTTACATCAATGTGACACATCACGCATTTTTACCACAGTCTCTCACCGCCCTCTCTCGCGCGCAGTAGCCATAGAAACCGGCCAAAGGGGCGCTTAGCAACACGAGAGGAGGAGGCACAGCATCATCTGCTGAGAGCGGAGGAAAAACAGCCGATGCGATCGACCTTCATTTCATCCAGACCTGCTTCTGATAAAGAAAGATAAATGTTAAATCGTTTAAATTTGTTTAGTAATTATTAAACACTCATAAAACTACATTCAGCGTTTTATTGTAAATCTCAATTGACGCGATGAAGTTCGTCGTGGTTTTAGTCTCCGCTGGCCTCCTGGCTTTTCTTGGCGCGGTCATCTGCATCATCGCCAGCGTGTACTCGCGATCATCGGCCGCCGCGCCCCAGGCGCTTTCCGACAACGGCTCGCTCTCGCTCCTGGAGCCGCTGCCTGGATCCGTGGCGCACGCCGGCCCGCTCGGAGCTCTCCATGGTGCTGAATCTTATGAAGGAGGCGGGTTGGACATCGGCCTGGAGATGCCGTCGCTCAATGAATTGAGTACTGGGGACGTGACTGGGCCAAGTCCCAAACAGTTCACCCTCAACCGACTCATTTGTACCCCTGTTCCCATCAGTGATTGCAAATCAAGGGATTTGAGACAACAAGCCGATGACCCTTTTGCCGACGAGGAGGACTGGAGCCTCCGCACCACAGCTGAAGAGCTCCGACAGATCGTCATGCAACAGAACGATCAAATCCTCATGGATCAGAGGACCATCACTGAGCTAACCGGGAAGCTGACGGAGTGTGAGAACGGACTGGAGGAAAGGAGTCTGCACGAGCGGAGTATGGGAGTATGGGCGAGCAACCGGCGCCACATGGCCGGGGATGATGTGAGCAGCTCGGTTGCGACGCAGCTGCAGACGGCGCGGGCTGTGGAGGAACTGGAGAGAGCGATTCTTCAGCTCAAAGATCGCATAGAGAAGTTGGAGTTGGAAATAGGCCCCGCAGTAATGAACCACACTGAGCATACTGTGAGCACATTGGGGAGCGTAGTGGTGGGCGAGCCTGGCAGGCCTGTGGAGGATCTGGAGGGAGAGCTGGAAAAGAAGATAAGACTGTTGGAGAAGGAGAGGAAGAACCTCCGCAAAGAGACCCAGAGCCACCACCAGCACATCGACCAGGGACTCAATACCCTTCAAGAGCGTATTGCAGAGCTTGAACAGAGTCTTACAGATTACAGTTACCCACAAGGGTATAAACTTTCTTTCCCCGTGCGGACTAACTACATGTATGGGCTTGTCAGGCGGAATATTCCAGAGATGTACGCCTTCACGGTGTGTCTATGGCTCAAGCCTGCCGAGAGTGGGATTGGGACACCGTTTTCCTACGCTGTACCAGAACAACCCAATGAAATTGTCCTGTTGCAGGGCATTCATAATCCTGCAGAACTACTCATCAATGATAAGGTGGCACAACTGCCTCTGTCTTTGCCCCAGGGCATCTGGCAGCACATATGTGTGAGTTGGACCCTACGGGATGGAGTTTGGAAAGCATATCAAGGCGGAAAGTTGAGAGGACGGGGTGAAGGGTTGTCCGCATGGCACCCAATCAAATCCGGGGGCGTCTTGGTATTGGGACAAGAACAGGACACCCTTGGTGGGAGGTTTGACGCATCCCAGGCTCTTGTTGGGGAGCTTTCATTGTTTAACCTGTGGGACCGAGTGTTGTCACCAACAGAAGTGGCCGCTCTGGCGGCTTGCCCAGAATCGCCACGGCTGGGGAACGTGGTGCCCTGGACAGACCGAGATGTGGACGTGTTTGGTGGGGCCGTCAAGGACCCCGTGGACCCCTGTGTTCAGAACTCCCATCCCCGACAATGAACGGGGCCATGGGTTGATACCTTTTTTTATGGAGGTGGTAAATGAGACAAAAAAAGGCTTGAAAGGTGTGCTGTGTGCTGTGCTGTGGTCCCGGTCTATGTATAGAATGTATTTACCATAGAGCTACATTCTCACTGAGTGTTCATTTCTGCAGGGAAGGGATTTGTCTGTGTGTTTGGTTGTGTTAGTTCGGATAGAGCTGCTGCCGAAGGCCTGTTTGCATCTCGTGTTGCTTGTGTTATTTCATGCCCTTCTTCTCAAAGCATTACCACACAGTGGTCCCTTCAGATATAGAGAATGTTTTTCTAATAAGATGGATGTGGCTCATTCTCACAGTACTTGTCTTGTTCTTGTTTTATTATTTGTGTAAAGTTGAGCTTTCGCTTCTTTCCCAGAGCAGCCTTTTCCTTTCTTGTTTTTATTACCGGTCCCTTAGGGTCACTTCCCTTGTAATACACTGTTATTTCCGTCAAGCTGCACTTAAAGGTGTACAACATCTTATCTTTATCATAACATGTCTTAAAATTTTTGCATCTTGGCATCTGGTGAAACGAGTCCTTACTCTGCAATGTATTTTCTCTCACGGGCTCAGCGAGATCCAAAAATATTTTAACCAAAATGTGTTATTTGAGGCTTAGTATCTTAAACGTCACACTAAATTTTAAAGATCTGATGTGCAGCCCACACACTATGAAAATATGAATGTTAAACAGTATTTAGCATCTTGTCGTGTGTTACCATTGCATTGTGCCTATAGCCCTCCTTGCCCCATCACAGAGAAAAGCTTAGGGAAGTGCCTGTTTATTTGACTTTTGCTATTGGTTGATGATCAGCTGTAATGTCAGTGTAGTGCTTCTTCATATATGCACCACAAAGGATCTACAATGATATTGTGACAAATGTGGATGAAAATATTAAAAAAGGTGAAGAAAATAAA

Function

symbol description
nptxrb Orthologous to human NPTXR (neuronal pentraxin receptor).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_06162749_06165879.mRNA True 3157 mRNA 0.47 5 6161812 6166515

Neighbor

gene id symbol gene type direction distance location
CI01000030_06143122_06149273 FAM20CL coding downstream 10560 6142954 ~ 6151252 (-)
CI01000030_06131710_06138371 NA coding downstream 23441 6131090 ~ 6138406 (-)
CI01000030_06107092_06109831 NA coding downstream 50836 6106653 ~ 6110976 (-)
CI01000030_06092897_06102203 NA coding downstream 59181 6092840 ~ 6102631 (-)
CI01000030_06079733_06090776 NA coding downstream 71036 6079691 ~ 6090776 (-)
CI01000030_06168725_06172057 POLR3F coding upstream 1939 6168454 ~ 6172057 (-)
CI01000030_06184908_06193012 KAT14, CSRP2BP coding upstream 18098 6184613 ~ 6193012 (-)
CI01000030_06383887_06390119 PDGFA, PDGFAA coding upstream 217063 6383578 ~ 6390119 (-)
CI01000030_06405632_06428709 NA coding upstream 239053 6405568 ~ 6428709 (-)
CI01000030_06430857_06435176 CCDC130 coding upstream 264247 6430762 ~ 6435176 (-)
G161352 NA non-coding downstream 42838 6114451 ~ 6118974 (-)
G161099 NA non-coding downstream 135796 6025636 ~ 6026016 (-)
G161097 NA non-coding downstream 139948 6021558 ~ 6021864 (-)
G161359 NA non-coding upstream 9071 6175586 ~ 6175946 (-)
G161375 NA non-coding upstream 14441 6180956 ~ 6181404 (-)
G161376 NA non-coding upstream 15752 6182267 ~ 6182496 (-)
G161377 NA non-coding upstream 26926 6193441 ~ 6193717 (-)
G161380 NA non-coding upstream 46716 6213231 ~ 6213574 (-)
G160949 NA other downstream 361386 5797297 ~ 5800426 (-)
G160712 NA other downstream 649738 5456960 ~ 5512074 (-)
G160713 NA other downstream 738299 5419119 ~ 5423513 (-)
G160213 NA other downstream 2692650 3466353 ~ 3469162 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 534540 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 576743 6746960 ~ 6752411 (-)
G163065 NA other upstream 757968 6924483 ~ 6925657 (-)
G163139 NA other upstream 982959 7149474 ~ 7150144 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other upstream 1568921 7735436 ~ 7737720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021182 nptxrb coding NC_007133.7 CM002906.2 25025136 ~ 25033105 (-)