CI01000030_06168725_06172057 (POLR3F)


Basic Information

Item Value
gene id CI01000030_06168725_06172057
gene name POLR3F
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 6168454 ~ 6172057 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_06168725_06172057.mRNA
ATGACAGAAGTTAAAGTCAAAAAAGAGTCAACGGATCCTGTAGACATCGAGAATCGGATAAAAGAGCTGTGTCAGCAGTTTCCACAAGGGATCACAGACCAGGTCATCCAGAATGACATGCCACACGTTGAAGCGCAGCAGCGGGCCACGGCCATCAACAGACTGCTGTCTGTGGAATTTGGAGCAGAGACATTAGATACAAGAGTAACCTTCCACTCACAGAAATCAATAAAATCCTCAAAAATCTTGAGAGCCTCTAAGAAGAAGGTCTACATGCTGTACAACCTGCAGCCGGACCGATCTGTGACAGGAGGCGCCTGGTATAGCGATCAAGATTTTGAGTCTGAGTTTGTTGAAGTTCTCAACCAACAGTGCTTTAAGTTCCTGCAAAGTAAGGTAGATCTGTCCATGGAGGACATTGAAACCATCCTAAACACACTGATCTTTGACGGCAAGGTGGAGATGACTATAATCGCTGCTAAAGAGGGGACAGTGGGGAGTGTCGATGGACAGATGAAGCTCTACAGGGGAGTGAATCCCATAATTCAACCCACAGGCCTGGTCAAAACACCATGTGGACTGTGTCCGGTTTTTGATGACTGTCATGAAGGGGGCGAAATCTCTCCATCTAACTGTGTTTACATGGTTGAGTGGTTGGACTTCTGACCAGCCAAGCGGATGACTTTGTTTTTCTCTGTGGAGAAAGTATTTTTCATGCAGCGATTCGATGCAGCTGAAGATTTCTTTTATTTATACTGAACATTAATGGCTTTAATGACACGAGCAGAACTACACTGAGTGAATAAGAAGCAGCTTACATTTGGAGTCATAAAAAGACTGATGTAATTTTTTCTTTTTTGGTAATGGTTTGTTCTTTTTTTTTTTTCACCCATAGATATGTCTTTAAAGATAAACCTCAACCACATCATTAAATAAA

Function

symbol description
polr3f Predicted to enable DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3F (RNA polymerase III subunit F).

GO: NA

KEGG:

id description
K03025 RPC6, POLR3F; DNA-directed RNA polymerase III subunit RPC6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_06168725_06172057.mRNA True 937 mRNA 0.43 6 6168454 6172057

Neighbor

gene id symbol gene type direction distance location
CI01000030_06162749_06165879 NPTXRB coding downstream 1939 6161812 ~ 6166515 (-)
CI01000030_06143122_06149273 FAM20CL coding downstream 17202 6142954 ~ 6151252 (-)
CI01000030_06131710_06138371 NA coding downstream 30083 6131090 ~ 6138406 (-)
CI01000030_06107092_06109831 NA coding downstream 57478 6106653 ~ 6110976 (-)
CI01000030_06092897_06102203 NA coding downstream 65823 6092840 ~ 6102631 (-)
CI01000030_06184908_06193012 KAT14, CSRP2BP coding upstream 12556 6184613 ~ 6193012 (-)
CI01000030_06383887_06390119 PDGFA, PDGFAA coding upstream 211521 6383578 ~ 6390119 (-)
CI01000030_06405632_06428709 NA coding upstream 233511 6405568 ~ 6428709 (-)
CI01000030_06430857_06435176 CCDC130 coding upstream 258705 6430762 ~ 6435176 (-)
CI01000030_06442356_06446395 MORG1, WDR83 coding upstream 270299 6442356 ~ 6446395 (-)
G161352 NA non-coding downstream 49480 6114451 ~ 6118974 (-)
G161099 NA non-coding downstream 142438 6025636 ~ 6026016 (-)
G161097 NA non-coding downstream 146590 6021558 ~ 6021864 (-)
G161359 NA non-coding upstream 3529 6175586 ~ 6175946 (-)
G161375 NA non-coding upstream 8899 6180956 ~ 6181404 (-)
G161376 NA non-coding upstream 10210 6182267 ~ 6182496 (-)
G161377 NA non-coding upstream 21384 6193441 ~ 6193717 (-)
G161380 NA non-coding upstream 41174 6213231 ~ 6213574 (-)
G160949 NA other downstream 368028 5797297 ~ 5800426 (-)
G160712 NA other downstream 656380 5456960 ~ 5512074 (-)
G160713 NA other downstream 744941 5419119 ~ 5423513 (-)
G160213 NA other downstream 2699292 3466353 ~ 3469162 (-)
CI01000030_06701334_06704398 MGC53794, FAM195A, FAM195A.S, MCRIP2 other upstream 528998 6701055 ~ 6704745 (-)
CI01000030_06747047_06752255 NA other upstream 571201 6746960 ~ 6752411 (-)
G163065 NA other upstream 752426 6924483 ~ 6925657 (-)
G163139 NA other upstream 977417 7149474 ~ 7150144 (-)
CI01000030_07736031_07737720 LSM7.L, GM13182, LSM7 other upstream 1563379 7735436 ~ 7737720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021183 polr3f coding NC_007133.7 CM002906.2 25034740 ~ 25043103 (-)